| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,638,072 – 19,638,165 |
| Length | 93 |
| Max. P | 0.784406 |
| Location | 19,638,072 – 19,638,165 |
|---|---|
| Length | 93 |
| Sequences | 7 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 80.36 |
| Shannon entropy | 0.39190 |
| G+C content | 0.51930 |
| Mean single sequence MFE | -25.28 |
| Consensus MFE | -17.71 |
| Energy contribution | -17.39 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.784406 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 19638072 93 + 23011544 UCCUGGGCUUGUUCCUUCUGCCUUUUGUUAUCGCCC-GGUCGCUAGCAAUCAUAAAUUGCUAAGGCCUACUCGCCGAGGAUCCUGCAGGAUUCG ..((((((........................))))-))((..(((((((.....))))))).(((......)))))((((((....)))))). ( -26.26, z-score = -0.73, R) >droSim1.chr2L 19325817 93 + 22036055 UCCCGGGCUUGUUCCUCCUGCCUUUUGUUAUCGCCC-GGUCGCUAGCAAUCAUAAAUUGCUAAAGCCUACUCGCCGAGAAUCCGGCAGGAUUCG ..((((((........................))))-))(((.(((((((.....)))))))..((......)))))((((((....)))))). ( -26.36, z-score = -1.21, R) >droSec1.super_7 3274619 93 + 3727775 UCCCGGGCUUGUUCCUCCUGCCUUUUGUUAUCGCCC-GGUCGCUAGCAAUCAUAAAUUGCUAAGGCCUACUCGCCGAGAAUCCGGCAGGAUUCG ..((((((........................))))-))((..(((((((.....))))))).(((......)))))((((((....)))))). ( -29.46, z-score = -1.62, R) >droYak2.chr2R 6133486 93 + 21139217 UCCUGUGCUUGUUCCUCCUGCCUUUUGUUAUCGCCC-GGUCGCUAGCAAUCAUAAAUUGCUAAGGCCUACUCGCCGAGGAUCCUGCAGGAUUCG ((((((......(((((..((.....((....))..-((((..(((((((.....))))))).)))).....)).)))))....)))))).... ( -26.90, z-score = -1.93, R) >droEre2.scaffold_4845 17936108 93 - 22589142 UCCUGUGCUUGUACCUCCUGCCUUUUGUUAUCGCCC-GGUCGCUAGCAAUCAUAAAUUGCUAAGGCCUACUCGCCGAGGAUCCUGCAGGAUUCG (((((((...((.((((..((.....((....))..-((((..(((((((.....))))))).)))).....)).))))))..))))))).... ( -24.70, z-score = -1.10, R) >droAna3.scaffold_12916 7044930 85 - 16180835 --------UCCUGCUUCGUGU-UGUUGUUAUCCUCCUGGUCGCUACCAAUCAUAAAUUGCUAAGGCCUACUCGCCGAAGCUACCGCAGGAUAAU --------((((((...((((-((..((...((....))..))...))).))).....(((..(((......)))..)))....)))))).... ( -21.90, z-score = -1.93, R) >droWil1.scaffold_180708 8378007 72 - 12563649 ---------------UCUUGU-UG--GUUGUUGUCCUGGUCGCUGGCAAUCAUAAAUUGUUAAGGCCUACUCAC--AGGAUACCGCAGGACC-- ---------------((((((-.(--((....((((((......(((...((.....)).....)))......)--))))))))))))))..-- ( -21.40, z-score = -1.33, R) >consensus UCCUGGGCUUGUUCCUCCUGCCUUUUGUUAUCGCCC_GGUCGCUAGCAAUCAUAAAUUGCUAAGGCCUACUCGCCGAGGAUCCUGCAGGAUUCG ...............((((((.....(((.((((...((((..(((((((.....))))))).)))).....)).)).)))...)))))).... (-17.71 = -17.39 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:52:38 2011