| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,594,529 – 19,594,630 |
| Length | 101 |
| Max. P | 0.881729 |
| Location | 19,594,529 – 19,594,630 |
|---|---|
| Length | 101 |
| Sequences | 10 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 73.46 |
| Shannon entropy | 0.52344 |
| G+C content | 0.31883 |
| Mean single sequence MFE | -14.09 |
| Consensus MFE | -10.06 |
| Energy contribution | -9.90 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.05 |
| Mean z-score | -0.95 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.881729 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 19594529 101 + 23011544 GCCACGUUUCAACCUUUAGCUUAAUGAGUAAAUCGUAAACUAAUUGCAAGAUAAUUAAUUUUAAUUAUUUGUGUAUUUUACUUGUAUUUCUUGGCCAAACC---------------- ((((.(((.........)))...(..((((((..((((.....)))).(((((((((....)))))))))......))))))..)......))))......---------------- ( -15.10, z-score = -0.91, R) >droSim1.chr2L 19282573 117 + 22036055 GCCACGUUUCCACCUUUAGCUUAAUGAGUAAAUCGUAAACUAAUUGCAAGAUAAUUAAUUUUAAUUAUUUGUGUAUUUUACUUGUAUUUCUUGGCCACCCCUUUCCCCAUUUCCCCA ((((.(((.........)))...(..((((((..((((.....)))).(((((((((....)))))))))......))))))..)......))))...................... ( -15.10, z-score = -1.67, R) >droSec1.super_7 3232156 109 + 3727775 GCCACGUUUCCACCUUUAGCUUGAUGAGUAAAUCGUAAACUAAUUGCAAGAUAAUUAAUUUUAAUUAUUUGUGUAUUUUACUUGUAUAUCUUGGCCACCCCUUUCCCCA-------- ((((.(((.........)))...(..((((((..((((.....)))).(((((((((....)))))))))......))))))..)......))))..............-------- ( -15.20, z-score = -1.25, R) >droEre2.scaffold_4845 17894358 101 - 22589142 GCCACGUUUCAACCUUCAGCUUAAUGAGUAAAUCGUAAACUAAUUGCAAGAUAAUUAAUUUUAAUUAUUUGUGUAUUUUACUUGUAUUUCUUGUCCACCCC---------------- .......................(..((((((..((((.....)))).(((((((((....)))))))))......))))))..)................---------------- ( -10.90, z-score = -0.38, R) >droAna3.scaffold_12916 7001217 88 - 16180835 AGCACGUUCCAACCUUUAGCUUAAGGAGUAAAUCGUAAACUAAUUGCUAGAUAAUUAAUUUUAAUUAUUUGUGUAUUUUACUCGGAUU----------------------------- .......(((...(((......)))(((((((..((((.....))))((((((((((....)))))))))).....))))))))))..----------------------------- ( -15.60, z-score = -1.31, R) >dp4.chr4_group5 1677608 101 + 2436548 GUCACGUUUCAACCUUUUGCCUAAUGAGUAAAUCGUAAACUAAUUGCAAGAUAAUUAAUUUUAAUUAUUUGUGUAUUUUACUUCUAAUUUCUGCCCCACUC---------------- .....((((..((..((((((....).)))))..))))))....(((((((((((((....))))))))).))))..........................---------------- ( -10.20, z-score = -0.54, R) >droWil1.scaffold_180708 8312797 87 - 12563649 ------------CUUUCGGCUUAAUGAGUAAAUCGUAAACUAAUUGCAAGAUAAUUAAUUUUAAUUAUUUGUGUAUUUUACUCGC-UUCUUCGCUCUCCU----------------- ------------.....((......(((((((..((((.....)))).(((((((((....)))))))))......)))))))((-......))...)).----------------- ( -13.60, z-score = -1.63, R) >droVir3.scaffold_12963 18531196 93 - 20206255 ---------GC-CGCCCAACUUAAUGAGUAAAUCGUAAACUAAUUGCAAGAUAAUUAAUUUUAAUUAUUUGUGUAUUUUACUUGGACCUCGCCUUUGCCUUAC-------------- ---------..-...((((......((.....))(((((.....(((((((((((((....))))))))).)))).)))))))))..................-------------- ( -10.80, z-score = 0.01, R) >droMoj3.scaffold_6500 3759538 98 - 32352404 ----UGCGCGCGCGUUGCGUCUAAUGAGUAAAUCGUAAACUAAUUGCAAGAUAAUUAAUUUUAAUUAUUUGUGUAUUUUACUUGGGCCCUGCCUUAGACCCC--------------- ----.((((....).)))(((((..(((((((..((((.....)))).(((((((((....)))))))))......)))))))((((...)))))))))...--------------- ( -19.10, z-score = -0.32, R) >droGri2.scaffold_15126 6838206 93 + 8399593 ---------GC-UGCCUUGCCUAAUGAGUAAAUCGUAAACUAAUUGCAAGAUAAUUAAUUUUAAUUAUUUGUGUAUUUUACUUCGGCU-UGCCUUUUACCUACU------------- ---------((-.((((((((....).))))...(((((.....(((((((((((((....))))))))).)))).)))))...))).-.))............------------- ( -15.30, z-score = -1.54, R) >consensus G_CACGUUUCCACCUUUAGCUUAAUGAGUAAAUCGUAAACUAAUUGCAAGAUAAUUAAUUUUAAUUAUUUGUGUAUUUUACUUGUAUUUCUUGUCCACCCC________________ .........................(((((((..((((.....)))).(((((((((....)))))))))......))))))).................................. (-10.06 = -9.90 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:52:34 2011