| Sequence ID | dm3.chr2L |
|---|---|
| Location | 1,821,449 – 1,821,558 |
| Length | 109 |
| Max. P | 0.797050 |
| Location | 1,821,449 – 1,821,558 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 73.51 |
| Shannon entropy | 0.48176 |
| G+C content | 0.52993 |
| Mean single sequence MFE | -33.12 |
| Consensus MFE | -18.81 |
| Energy contribution | -19.70 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.797050 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 1821449 109 + 23011544 CCUGUCCUCGUACUUUUGCUUCUUCCAGAAGGGUCCUUUUUCGGGGUACA---CGUUCUUGUGCCCCUUCUCGAUGUAGAAGUCAUC------GUCCCUCUGGGGAGCCGCGAAAUAG .((((..((((......(((((..(((((.(((.(.......((((((((---......)))))))).....((((.......))))------).))))))))))))).)))).)))) ( -38.20, z-score = -2.84, R) >droSim1.chr2L 1805611 109 + 22036055 CCUGUCCUCGUACUUUUGCUUCUUCCAGAAGGGUCCUUUUUCGGGGUACA---CGUUCUUGUGCCCGUUCUCGAUGUAGAAGUCAUU------GUCCCUCUGGGGAGCCGCAUAAUAG .................(((((..(((((.(((..........(((((((---......))))))).....(((((.......))))------).))))))))))))).......... ( -30.30, z-score = -0.81, R) >droSec1.super_14 1768142 109 + 2068291 CCUGUCCUCGUACUUUUGCUUCUUCCAGAAGGGUCCUUUUUCGGGGUACA---CGUUCUUGUGCCCGUUCUCAAUGUAGAAGUCAUU------GUCCCUCUGGGGAGCCGCAUAAUAG .................(((((..(((((.(((..........(((((((---......))))))).....(((((.......))))------).))))))))))))).......... ( -30.60, z-score = -1.33, R) >droYak2.chr2L 1794525 109 + 22324452 CUUGUCGUUGUACGUUCGCUUCUCCCAGAAGGGUCCUUGCUCGGGAUACG---CGUUCCUGUGCCCCCUCUCGAUGUAGAAGUCAUU------GUCCCUCUGGGGAACCGCGAAGUAG ..........(((.((((((((.((((((.(((.....((.(((((....---...))))).)).......(((((.......))))------).))))))))))))..)))))))). ( -36.20, z-score = -1.53, R) >droEre2.scaffold_4929 1866371 109 + 26641161 CUUGUCCUUGAACUUUCGCCCGUCCCUGAAGGGUCCUUGCUCGGGAUACG---CGUUCCUGUGCCCCUUCUCGAUGUAGAAGUCAUU------GUCCCGAUGGGGAGCCGCGAAAUAG .............((((((...(((((((((((.....((.(((((....---...))))).)))))))).(((((.......))))------).......)))))...))))))... ( -33.90, z-score = -0.83, R) >droAna3.scaffold_12916 15763786 118 + 16180835 CCGAUCACUAUAUUCCCUUGUUCUAACUGAGGGUCCCCGAUCCCUGUACCUUCCAUUAAGGUGUCUGCCUGCUAUCCGGUAGUUCUUCUUGAAGUCCCUUUCGGGAACUUCAACAUGG ..((((........(((((((....)).))))).....))))((((((((((.....)))))..(((((........))))).......(((((((((....))).))))))))).)) ( -29.52, z-score = -1.21, R) >consensus CCUGUCCUCGUACUUUCGCUUCUUCCAGAAGGGUCCUUGUUCGGGGUACA___CGUUCUUGUGCCCCUUCUCGAUGUAGAAGUCAUU______GUCCCUCUGGGGAGCCGCAAAAUAG ................(((...(((((((.(((.(.......((((((((.........))))))))...((......)).............).))))))))))....)))...... (-18.81 = -19.70 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:09:22 2011