Locus 2486

Sequence ID dm3.chr2L
Location 19,397,825 – 19,397,919
Length 94
Max. P 0.855590
window3414 window3415

overview

Window 4

Location 19,397,825 – 19,397,919
Length 94
Sequences 3
Columns 94
Reading direction forward
Mean pairwise identity 97.16
Shannon entropy 0.03908
G+C content 0.35106
Mean single sequence MFE -17.53
Consensus MFE -16.30
Energy contribution -16.63
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.83
Structure conservation index 0.93
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.93
SVM RNA-class probability 0.855590
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 19397825 94 + 23011544
ACUUCACUCACUGUUUGGUUAUUAUCUUUAAACAAUGUUUCAUUUUACGAACUUGAUAACCACUCAUAUAGAGGCUAUAAGCAGCCCGCUUUUA
..........((((((((((((((..(((....((((...))))....)))..)))))))).(((.....))).....)))))).......... ( -15.40, z-score =  -1.62, R)
>droSim1.chr2L 19079516 94 + 22036055
ACUUCACUCACUGUUUGGUUAUUAUCUUUAAACAAUGUUUAAUUUUACGAACUUGAUAACCACUCAUAUAGGGGCUAUAAGCAGCCCGCCUUUA
......((...((..(((((((((..(((....(((.....)))....)))..)))))))))..))...))(((((......)))))....... ( -18.60, z-score =  -2.14, R)
>droSec1.super_7 3014075 94 + 3727775
ACUUCACUCACUGUUUGGUUAUUAUCUUUAAACAAUGUUUAAUUUUACGAACUUGAUAACCACUCAUAUAGGGGCUAGAAGCAGCCCGCCUUUA
......((...((..(((((((((..(((....(((.....)))....)))..)))))))))..))...))(((((......)))))....... ( -18.60, z-score =  -1.73, R)
>consensus
ACUUCACUCACUGUUUGGUUAUUAUCUUUAAACAAUGUUUAAUUUUACGAACUUGAUAACCACUCAUAUAGGGGCUAUAAGCAGCCCGCCUUUA
......((...((..(((((((((..(((....(((.....)))....)))..)))))))))..))...))(((((......)))))....... (-16.30 = -16.63 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 5

Location 19,397,825 – 19,397,919
Length 94
Sequences 3
Columns 94
Reading direction reverse
Mean pairwise identity 97.16
Shannon entropy 0.03908
G+C content 0.35106
Mean single sequence MFE -19.55
Consensus MFE -18.99
Energy contribution -19.32
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.32
Structure conservation index 0.97
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.59
SVM RNA-class probability 0.752965
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 19397825 94 - 23011544
UAAAAGCGGGCUGCUUAUAGCCUCUAUAUGAGUGGUUAUCAAGUUCGUAAAAUGAAACAUUGUUUAAAGAUAAUAACCAAACAGUGAGUGAAGU
.....(((((((....((((((.((.....)).))))))..))))))).........((((((((.............))))))))........ ( -20.22, z-score =  -1.84, R)
>droSim1.chr2L 19079516 94 - 22036055
UAAAGGCGGGCUGCUUAUAGCCCCUAUAUGAGUGGUUAUCAAGUUCGUAAAAUUAAACAUUGUUUAAAGAUAAUAACCAAACAGUGAGUGAAGU
.....(((((((....((((((.((.....)).))))))..)))))))....(((..((((((((.............))))))))..)))... ( -19.92, z-score =  -1.40, R)
>droSec1.super_7 3014075 94 - 3727775
UAAAGGCGGGCUGCUUCUAGCCCCUAUAUGAGUGGUUAUCAAGUUCGUAAAAUUAAACAUUGUUUAAAGAUAAUAACCAAACAGUGAGUGAAGU
.....(((((((.....(((((.((.....)).)))))...)))))))....(((..((((((((.............))))))))..)))... ( -18.52, z-score =  -0.72, R)
>consensus
UAAAGGCGGGCUGCUUAUAGCCCCUAUAUGAGUGGUUAUCAAGUUCGUAAAAUUAAACAUUGUUUAAAGAUAAUAACCAAACAGUGAGUGAAGU
.....(((((((....((((((.((.....)).))))))..))))))).........((((((((.............))))))))........ (-18.99 = -19.32 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:52:03 2011