| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,397,041 – 19,397,151 |
| Length | 110 |
| Max. P | 0.921027 |
| Location | 19,397,041 – 19,397,151 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 66.47 |
| Shannon entropy | 0.63309 |
| G+C content | 0.39657 |
| Mean single sequence MFE | -27.53 |
| Consensus MFE | -8.68 |
| Energy contribution | -9.76 |
| Covariance contribution | 1.09 |
| Combinations/Pair | 1.53 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.32 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.28 |
| SVM RNA-class probability | 0.921027 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 19397041 110 + 23011544 GAAAUGGAAGUCGAUUACCCUAAAAAAGGGGGGUGCGUCAGUCGCAUGAAACAGAAAUUAUGAAUGUGCUUAGUGUGGGGCAUACAUAUACAU--AUGUA-----AAUCCAAACAAA ....((((.((((((((((((........)))))).)))..((((((...(((...........))).....))))))))).((((((....)--)))))-----..))))...... ( -25.80, z-score = -1.33, R) >droAna3.scaffold_12916 11153939 107 - 16180835 AGAUCAGGGGCGUAUAUGCUUUUUGUUGCCGAGUGUGUCAGCCACG---GCCGGAAAGAGCAAAUAUGUUUAUAAAACGGCAGAAAGCCAAACAAACAGA-----AAUCCAAACA-- ......(((((((((.((((((((.(.((((.(.((....))).))---)).).)))))))).)))))).........(((.....)))...........-----..))).....-- ( -29.80, z-score = -2.05, R) >droEre2.scaffold_4845 17691559 95 - 22589142 GAAAUGGAAGUCGAUUACCCUAAAAAGGGG-----CGUGAGUCGCAUGAAACUGAAAUUGUGAGUGUGCUCAAUGUGCGGCAUA------------UGCA-----AAUCCAAACAAA ....((((.........((((....))))(-----((((.(((((((...((.......))(((....)))...))))))).))------------))).-----..))))...... ( -28.30, z-score = -2.77, R) >droYak2.chr2R 5895205 97 + 21139217 GAAAUGGAAUUCGAUAA--CAAAAGAAGGU-----UAAGAGUCCCGUGAAACUGAAAUUAUGAAUGUGCUUGAUGUGGGACAUACGUA--------UUUA-----AAUCCAAACAAA ...((((.((((..(((--(........))-----)).)))).))))...........((((.((((.((......)).)))).))))--------....-----............ ( -15.50, z-score = -0.29, R) >droSec1.super_7 3013283 117 + 3727775 GAAAUGGAAGUCGAUAAACCUAAAAAAGGGGCGUGCGUGAGUCGCAUGAAACAGAAAUUAUGAAUGUGCUUAGUGUGCGGCAUACAUAUGUAUCCAUACAUAUGUAAUCCAAACAAA ....((((.(((......(((......)))(((..(.((((.(((((.....(....).....))))))))))..)))))).((((((((((....)))))))))).))))...... ( -34.10, z-score = -3.47, R) >droSim1.chr2L 19078726 112 + 22036055 GAAAUGGAAGUCGAUAACCCUAAAAAAGGGGCGUGCGUAAGUCGCAUGAAACAGAAAUUAUGAAUGUGCUUAGUGUGCGGCAUACAUAUGAAUGUAUGGA-----AAUCCAAACAAA ....((((..((.....((((.....))))(((..(.((((.(((((.....(....).....))))))))))..)))..(((((((....)))))))))-----..))))...... ( -31.70, z-score = -3.48, R) >consensus GAAAUGGAAGUCGAUAACCCUAAAAAAGGGG_GUGCGUGAGUCGCAUGAAACAGAAAUUAUGAAUGUGCUUAGUGUGCGGCAUACAUAU__AU__AUGCA_____AAUCCAAACAAA ....((((.........((((.....))))..........(((((((...........................)))))))..........................))))...... ( -8.68 = -9.76 + 1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:52:02 2011