| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,383,826 – 19,383,933 |
| Length | 107 |
| Max. P | 0.853272 |
| Location | 19,383,826 – 19,383,933 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 67.94 |
| Shannon entropy | 0.57774 |
| G+C content | 0.44445 |
| Mean single sequence MFE | -23.66 |
| Consensus MFE | -15.29 |
| Energy contribution | -16.07 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.11 |
| Mean z-score | -0.78 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.853272 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 19383826 107 + 23011544 -----------UUGCAGCGCAAUCACAUAUGCCUUCGUUUUAUAUAUAAGUAAAAUAAAACCCACCGAGUUCUGGGAAGACCACUUGGACUGCUUCUCCCACUGCUUGGUACGGUAGC -----------((((...)))).......((((...(((((((......))))))).......(((((((..(((((((.((....)).)).....)))))..)))))))..)))).. ( -26.10, z-score = -1.08, R) >droSim1.chr2L 19065538 100 + 22036055 ------------------UUGAUAAAGUAGAAAGUUGUUUUAUAUAAAAGUCAAAUAAAACCCACCGAGUUCUGGGAAGACCACUUGGACUGCUUCUCCCACUGCUUGGAACGGUAGC ------------------(((((...((((((.....))))))......))))).....(((..((((((..(((((((.((....)).)).....)))))..))))))...)))... ( -21.60, z-score = -0.38, R) >droSec1.super_7 3000127 118 + 3727775 UUGAUCUGUAAUUGCAGCGCAAUCACAUAAACUAUUCUUUUAUAUAAAAGUCAAAUAAAACCCACCGAGUUCUGGGAAGACCACUUGGACUGCUUCUCCCACUGCUUGGAACGGUAGC ((((..(((.(((((...))))).))).........(((((....))))))))).....(((..((((((..(((((((.((....)).)).....)))))..))))))...)))... ( -26.00, z-score = -1.17, R) >droYak2.chr2R 5881676 87 + 21139217 -------------------------------UGCAUUUUUUAUGCACAUGUCAAAUAAAACCCACCGAGUUCUGGGAAGACCACUUGGACUGCUUCUCCCACUGCUUGGUACUGUAGC -------------------------------(((((.....))))).................(((((((..(((((((.((....)).)).....)))))..)))))))........ ( -22.50, z-score = -1.57, R) >droEre2.scaffold_4845 17678085 101 - 22589142 UUGGUCAUCAAUUGCAGCGCAAU-----------------UAUACAGAUGUCAAAUAAAACCCACCGAGUUCUGGGAAGACCACUUGGACUGCUUCUCCCACUGCUUGGUGCUGUAGC ((((.((((((((((...)))))-----------------).....))))))))........((((((((..(((((((.((....)).)).....)))))..))))))))....... ( -28.20, z-score = -1.24, R) >droGri2.scaffold_15126 8240739 83 - 8399593 -----------------------------------AGAGUUUUUCAUGUCUAAAAUCGAACUCACCUCAGACUGGGAAGACCACUUGGAUUGCUUCUCCCAUUGCUUGGUCUGGUAGC -----------------------------------.((((((...............))))))...(((((((((((((.((....))....)))))).........))))))).... ( -17.56, z-score = 0.73, R) >consensus __________________GCAAU___________UUGUUUUAUACAAAAGUCAAAUAAAACCCACCGAGUUCUGGGAAGACCACUUGGACUGCUUCUCCCACUGCUUGGUACGGUAGC ...........................................................(((..((((((..(((((((.((....)).)).....)))))..))))))...)))... (-15.29 = -16.07 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:51:58 2011