| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,343,527 – 19,343,649 |
| Length | 122 |
| Max. P | 0.723943 |
| Location | 19,343,527 – 19,343,649 |
|---|---|
| Length | 122 |
| Sequences | 6 |
| Columns | 140 |
| Reading direction | forward |
| Mean pairwise identity | 72.14 |
| Shannon entropy | 0.49615 |
| G+C content | 0.52202 |
| Mean single sequence MFE | -41.39 |
| Consensus MFE | -23.17 |
| Energy contribution | -24.01 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.34 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.723943 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 19343527 122 + 23011544 CAAAGGCCGGCAAAAAAUUAGAGUUUUCGCCGGGGUCACUCUUCGGGUUCAGCGCUUUGGCAGUGACCAUCUCAUAACUUGGGUUCUUUUUCUGGCCAGGGAGUGGUGGAUCUAAAGAGGGG------------------ ......(((((.((((.......)))).))))).....(((((..((((((.(((((((((((.......((((.....))))........)).))))..))))).))))))..)))))...------------------ ( -40.96, z-score = -1.31, R) >droSim1.chr2L 19036441 122 + 22036055 CAAAGGCCGGCAAAAAAUUAGAGUUUUCGCCGGGGUCACUCUUCGGGUUCAGCGGUUUGGCAGUGACCAUCUCAUAACUUGGGCUUCUUUUUUGUCCAGGGACUGUUGGAUCUGAAGGGGAG------------------ ......(((((.((((.......)))).)))))..((.((((((((((((((((((((((......)))........(((((((.........)))))))))))))))))))))))))))).------------------ ( -49.00, z-score = -3.71, R) >droSec1.super_7 2971437 122 + 3727775 CAAAGGCCGGCAAAAAAUUAGACUUUUCGCCGGGGUCACUCUUCGGGUUCAGCGGUUUGGCAGUGACCAUCUCAUAACUUGGGCUCCUUUUUUGGCCAGGGAGUGUUGGAACUGAAGGGGAG------------------ ......(((((.((((.......)))).)))))..((.((((((((.((((((((((.......))))..............(((((((........))))))))))))).)))))))))).------------------ ( -40.80, z-score = -0.71, R) >droYak2.chr2R 5851046 139 + 21139217 CAAAGGCCGGCAAAAAAUUAGAGUUUUCGCCGGGGUCACUCUUCGGGUUCAGCGGUUUGGCAGUGACCAUCUCAUAACUCGGG-UUCUUUUUUGGACUGGGAGGAGUGGAUGUGAUGGCGGGAAGGCAUCUGAAGGGGAC ......(((((.((((.......)))).))))).(((.((((((((((...((..(((.((.((.((.(((.(((..(((.((-(((......))))).).))..)))))))).)).)).)))..))))))))))))))) ( -47.80, z-score = -1.56, R) >droEre2.scaffold_4845 17647284 115 - 22589142 CAAAGGCCGG-AAAAAAUUAGAGUUUUCGCCGGGGUCACUCUUCGGGUUUGGCGGUUUGGCAGUGACCAUCUCAUAACUUGGGCUCCCUUUUUGGGCAGG------CAUAUCUGAAGGGGAG------------------ ......((((-..(((((....)))))..))))..((.((((((((((...((((((.......))))..((((.....))))(((((.....))).)))------)..)))))))))))).------------------ ( -36.60, z-score = -0.36, R) >droAna3.scaffold_12916 11109123 104 - 16180835 CCAGUUCCAGUUCGACAUUCAAAGAGCGACUGGGGUCAGGCCUUGGGCUCAGAGG------------CAUCUCAUAACUUUUA--UUUUGGUUGCCCUGGGAGU----GGUCUAGGGAGGAG------------------ (((.((((((..((((.......((((..(..(((.....)))..))))).(((.------------...)))..........--.....))))..)))))).)----))............------------------ ( -33.20, z-score = -0.02, R) >consensus CAAAGGCCGGCAAAAAAUUAGAGUUUUCGCCGGGGUCACUCUUCGGGUUCAGCGGUUUGGCAGUGACCAUCUCAUAACUUGGGCUCCUUUUUUGGCCAGGGAGUG_UGGAUCUGAAGGGGAG__________________ ......(((((.((((.......)))).)))))..((.(((((((((((((..((((.......)))).........((((...............))))......)))))))))))))))................... (-23.17 = -24.01 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:51:58 2011