| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,342,334 – 19,342,386 |
| Length | 52 |
| Max. P | 0.753544 |
| Location | 19,342,334 – 19,342,386 |
|---|---|
| Length | 52 |
| Sequences | 8 |
| Columns | 59 |
| Reading direction | forward |
| Mean pairwise identity | 77.07 |
| Shannon entropy | 0.41795 |
| G+C content | 0.53225 |
| Mean single sequence MFE | -17.47 |
| Consensus MFE | -9.37 |
| Energy contribution | -9.20 |
| Covariance contribution | -0.17 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.753544 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 19342334 52 + 23011544 GCAACUUCCUUUGCUAUGUGCAACAUGUUGCACGUUGCUG-UUGCCGA-GCUGC----- (((((.......((.((((((((....)))))))).)).)-))))...-.....----- ( -17.20, z-score = -1.90, R) >dp4.chr4_group4 429571 54 - 6586962 GUGGCUGCCUCGCGAACGUGCAACAUGUUGCACGUUGUCGUCUGUCGAGUCUGU----- ..(((((.(..((((((((((((....))))))))..))))..).).))))...----- ( -18.70, z-score = -1.11, R) >droPer1.super_16 735294 54 + 1990440 GUGGCUGCCUCGCGAACGUGCAACAUGUUGCACGUUGUCGUCUGUCGAGUCUGU----- ..(((((.(..((((((((((((....))))))))..))))..).).))))...----- ( -18.70, z-score = -1.11, R) >droSim1.chr2L 19035364 52 + 22036055 GCAACUUCCUUUGCUAUGUGCAACAUGUUGCACGUUGCUG-UUGCCGA-GCUGC----- (((((.......((.((((((((....)))))))).)).)-))))...-.....----- ( -17.20, z-score = -1.90, R) >droSec1.super_7 2970330 52 + 3727775 GCAACUUCCUUUGCUAUGUGCAACAUGUUGCACGUUGCUU-UUGCCGA-GCUGC----- (((.(((.....((.((((((((....)))))))).))..-.....))-).)))----- ( -15.80, z-score = -1.86, R) >droYak2.chr2R 5849919 52 + 21139217 GCAACUUCCUUUGCUAUGUGCAACAUGUUGCACGUUGCUG-UUGCCGA-GUUGC----- (((((((.....((.((((((((....)))))))).))..-.....))-)))))----- ( -20.00, z-score = -3.30, R) >droEre2.scaffold_4845 17646152 52 - 22589142 GCAACUUCCUUUGCUAUGUGCAACAUGUUGCACGUUGCUG-UUGCCGA-GUUGC----- (((((((.....((.((((((((....)))))))).))..-.....))-)))))----- ( -20.00, z-score = -3.30, R) >droAna3.scaffold_12916 11108087 56 - 16180835 -UGACUUCCUCUCCCAUGUGCAACAUGUUGC-CAUUGCUG-CGGCUGCCACCGCGUUGU -.(((..........(((.((((....))))-)))....(-(((......))))))).. ( -12.20, z-score = 0.08, R) >consensus GCAACUUCCUUUGCUAUGUGCAACAUGUUGCACGUUGCUG_UUGCCGA_GCUGC_____ ...............((((((((....))))))))........................ ( -9.37 = -9.20 + -0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:51:56 2011