| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,331,449 – 19,331,542 |
| Length | 93 |
| Max. P | 0.676992 |
| Location | 19,331,449 – 19,331,542 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 79.04 |
| Shannon entropy | 0.37122 |
| G+C content | 0.46219 |
| Mean single sequence MFE | -23.15 |
| Consensus MFE | -16.27 |
| Energy contribution | -16.50 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.676992 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 19331449 93 - 23011544 --------AACCAAGAACCGUGAAUGCAAUGAAGGCCCGUU--UGGCUCAGACGGACCACCCCAAAAUGCUAUUGAAAUUUCGGAAUUUGCAAUAGCAGAAAU --------.........................((.(((((--((...))))))).)).........(((((((((((((....))))).))))))))..... ( -21.90, z-score = -1.46, R) >droAna3.scaffold_12916 11097598 102 + 16180835 AUGGAGGAGAGGUAGGAUGGAAGA-GCAACCGGGUCAGGCUGGUAGGACCCGGGGACCACCCCAAAAUCCUAUUGAAAUUUCGAAAUUUGCAAUCCCAGAAAU .(((((....((((((((((....-....))(((((..(....)..)))))((((....))))...))))))))....))))).................... ( -28.50, z-score = 0.19, R) >droEre2.scaffold_4845 17635528 81 + 22589142 ----------------ACCGAAA--CCAA-GAAGGCCCGUU--UGGGUCAGACGGACCA-CCCAAAAUGCUAUUGAAAUUUCGGAAUUUGCAAUGCCAGAAAU ----------------.((((((--....-((.(((...((--(((((..........)-))))))..))).))....))))))................... ( -18.40, z-score = -0.69, R) >droYak2.chr2R 5839053 82 - 21139217 ----------------ACCGAAA--GCAA-GCAGGCCCGUU--UGGGUCAGACGGACCACCCCAAAAUGCUAUUGAAAUUUCGGAAUUUGCAAUAGCAGAAAU ----------------.((((((--.(((-((((((((...--.)))))....((......))....))))..))...))))))..(((((....)))))... ( -25.50, z-score = -2.89, R) >droSec1.super_7 2959571 91 - 3727775 ---------ACCAAGAACCGAGAAUGCAA-GAAGGCCCGUU--UGGGUCAGACGGACCACCCCAAAAUGCUAUUGAAAUUUCGGAAUUUGCAAGAGCAGAAAU ---------........((((((...(((-...(((((...--.)))))....((......)).........)))...))))))..(((((....)))))... ( -22.30, z-score = -1.59, R) >droSim1.chr2L 19024571 91 - 22036055 ---------ACCAAGAACCGAGAAUGCAA-GAAGGCCCGUU--UGGGUCAGACGGACCACCCCAAAAUGCUAUUGAAAUUUCGGAAUUUGCAAUAGCAGAAAU ---------........((((((...(((-...(((((...--.)))))....((......)).........)))...))))))..(((((....)))))... ( -22.30, z-score = -1.70, R) >consensus _________ACCAAGAACCGAAAA_GCAA_GAAGGCCCGUU__UGGGUCAGACGGACCACCCCAAAAUGCUAUUGAAAUUUCGGAAUUUGCAAUAGCAGAAAU .................((((((...(((....((((((....))))))....((......)).........)))...))))))..(((((....)))))... (-16.27 = -16.50 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:51:56 2011