| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,307,862 – 19,307,958 |
| Length | 96 |
| Max. P | 0.871485 |
| Location | 19,307,862 – 19,307,958 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 79.72 |
| Shannon entropy | 0.32113 |
| G+C content | 0.42809 |
| Mean single sequence MFE | -23.68 |
| Consensus MFE | -17.48 |
| Energy contribution | -18.10 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.871485 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 19307862 96 - 23011544 ACCGGUCGGUCGCAGUGGGGAUACCAUAGCAAAGGGUAUUUCGAUUCCUCGACCAAAUACAGAGCACAUAUUUGAGAAUUCACUUACCUUUGAUUU- ...((((((..(.(((.(..(((((.........)))))..).)))).)))))).....(((((....((..((......))..)).)))))....- ( -21.50, z-score = -0.51, R) >droYak2.chr2R 5815367 93 - 21139217 ----GCCGGUCGCAGUGGGGACACCCUAGCAGAGGGUAUUUGGAUUCGACCACUUUAUUUUGAGCACAUAUUUGGAAAUUUGCUUACCUUUAAUUUG ----...(((((.(((..(((.(((((.....))))).)))..)))))))).........((((((.((........)).))))))........... ( -21.80, z-score = -0.62, R) >droSec1.super_7 2936142 92 - 3727775 ----ACCGGUCGCAGUGGGAGUACCCUAGCAAAGGGUAUUUCGAUUCCUCGACCAAAUACAGAGCACAUAUUUGUUAAUUUACUUAACUUUGAUUU- ----...(((((.(((.((((((((((.....)))))))))).)))...))))).....(((((.......................)))))....- ( -25.20, z-score = -2.87, R) >droSim1.chr2L 18999061 88 - 22036055 ----ACCGGUCGCAGUGGGAAUACCCUAGCAAAGGGUAUUUCGAAUCCUCGACCAAGUACAUAGCACAUAUUUGUGAAUUUACCUACCUUUA----- ----...(((((...(.((((((((((.....)))))))))).).....)))))..(((.....((((....))))....))).........----- ( -26.20, z-score = -3.11, R) >consensus ____ACCGGUCGCAGUGGGAAUACCCUAGCAAAGGGUAUUUCGAUUCCUCGACCAAAUACAGAGCACAUAUUUGUGAAUUUACUUACCUUUAAUUU_ .......(((((.(((.((((((((((.....)))))))))).)))...)))))........................................... (-17.48 = -18.10 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:51:52 2011