| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,284,958 – 19,285,010 |
| Length | 52 |
| Max. P | 0.837519 |
| Location | 19,284,958 – 19,285,010 |
|---|---|
| Length | 52 |
| Sequences | 3 |
| Columns | 57 |
| Reading direction | reverse |
| Mean pairwise identity | 63.74 |
| Shannon entropy | 0.49942 |
| G+C content | 0.59638 |
| Mean single sequence MFE | -19.77 |
| Consensus MFE | -8.24 |
| Energy contribution | -9.47 |
| Covariance contribution | 1.23 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.837519 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 19284958 52 - 23011544 CACAAACCCGAUUCG-GUUCCCGUAUCCCGGAUCCCUCCUGGUGAAUCCGGCU---- .........(((.((-(...))).)))(((((((((....)).).))))))..---- ( -14.50, z-score = -0.95, R) >dp4.chr4_group4 365141 57 + 6586962 CGCAUACCCCAUCAGCGGCAGCAGAUGUCCCCCAACUCCUGGGGGAUCGUAUCUGUU (((...........)))..(((((((((((((((.....))))))))...))))))) ( -22.40, z-score = -2.62, R) >droPer1.super_16 674504 57 - 1990440 CGCAUACCCCAUCAGCGGCAGCAGAUGUCCCCCAACUCCUGGGGGAUCGUAUCUGUU (((...........)))..(((((((((((((((.....))))))))...))))))) ( -22.40, z-score = -2.62, R) >consensus CGCAUACCCCAUCAGCGGCAGCAGAUGUCCCCCAACUCCUGGGGGAUCGUAUCUGUU .........((((.((....)).))))(((((((.....)))))))........... ( -8.24 = -9.47 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:51:51 2011