| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,280,187 – 19,280,283 |
| Length | 96 |
| Max. P | 0.776967 |
| Location | 19,280,187 – 19,280,283 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 84.92 |
| Shannon entropy | 0.27561 |
| G+C content | 0.47837 |
| Mean single sequence MFE | -15.72 |
| Consensus MFE | -12.44 |
| Energy contribution | -12.63 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.776967 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 19280187 96 + 23011544 GCUUAAUCUGGCUAAAAGUGCACUUAAAAAUCAUUCACGUUCGCAUUUGCAUCUGCAUUAGCCAUUCCACAAGCCCCACACCACCCCGCCCACCCC ((((....(((((((((((((.....................))))))((....)).)))))))......))))...................... ( -15.80, z-score = -2.28, R) >droSim1.chr2L 18971189 88 + 22036055 GCUUAAUCUGGCUAAAAGUGCACUUAAAAAUCAUUCACGUUCGCAUUUGCAUCUGCAUUAGCCAUUCCACAAGCCC--------CCCGCCCACCCC ((((....(((((((((((((.....................))))))((....)).)))))))......))))..--------............ ( -15.80, z-score = -2.31, R) >droSec1.super_7 2908740 88 + 3727775 GCUUAAUCUGGCUAAAAGUGCACUUAAAAAUCAUUCACGUUCGCAUUUGCAUCUGCAUUAGCCAUUCCACAAGCCC--------CCCGCCCGCCCC ((((....(((((((((((((.....................))))))((....)).)))))))......))))..--------............ ( -15.80, z-score = -1.64, R) >droYak2.chr2R 5788001 87 + 21139217 GCUUAAUCUGGCUAAAAGUGCACUUAAAAAUCAUUCACGUUCGCAUUUGCAUCUGCUUUAGCCAUUCCGCAACCAC---------CCACCUGCCCC ((......(((((((((((((.....................))))))((....)).)))))))....))......---------........... ( -13.80, z-score = -1.14, R) >droEre2.scaffold_4845 17586869 88 - 22589142 GCUUAAUCUGGCUAAAAGUGCACUUAAAAAUCAUUCACGUUCGCAUUUGCAUCUGCAUUAGCCAUUCCACAGCCCC--------GCCGCCUUCCCC (((.....(((((((((((((.....................))))))((....)).)))))))......)))...--------............ ( -15.30, z-score = -1.36, R) >droAna3.scaffold_12916 11041299 83 - 16180835 ACUUAAUCUGGCUAAAAGCGCACUUAAAAAUCAUUCACGUUAGCAUUCGCAUUUGCAUUAGCCGUUAGCUCGCUUC---------UUGGCCA---- .........(((((((((((......................(((........)))...(((.....)))))))).---------)))))).---- ( -17.80, z-score = -0.90, R) >consensus GCUUAAUCUGGCUAAAAGUGCACUUAAAAAUCAUUCACGUUCGCAUUUGCAUCUGCAUUAGCCAUUCCACAACCCC________CCCGCCCACCCC ........(((((((((((((.....................))))))((....)).)))))))................................ (-12.44 = -12.63 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:51:49 2011