| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,277,704 – 19,277,808 |
| Length | 104 |
| Max. P | 0.874631 |
| Location | 19,277,704 – 19,277,808 |
|---|---|
| Length | 104 |
| Sequences | 12 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 84.41 |
| Shannon entropy | 0.32513 |
| G+C content | 0.37623 |
| Mean single sequence MFE | -21.78 |
| Consensus MFE | -14.10 |
| Energy contribution | -14.10 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.874631 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 19277704 104 + 23011544 ------CCACCCAGAGGAAGCAAUGAAUUCAUUCAUUUGUUUACUCGUUCAAGUGGCAACUUCAUUUUGUAAACACUUUCGUUUACAUACAACUUUUGGCCCUACAACAA------ ------.......(((.((((((((((....)))).)))))).)))(((..((.(((..........(((((((......)))))))...........)))))..)))..------ ( -22.70, z-score = -2.86, R) >droSim1.chr2L 18968744 100 + 22036055 ------CCGCCCAGAGGAAGCAAUGAAUUCAUUCAUUUGUUUACUCGUUCAAGUGGCAACUUCAUUUUGUAAACACUUUCGUUUACAUACAACUUUUGGCCCUACA---------- ------.......(((.((((((((((....)))).)))))).))).....((.(((..........(((((((......)))))))...........)))))...---------- ( -21.50, z-score = -2.33, R) >droSec1.super_7 2906347 100 + 3727775 ------CCACCCGGAGGAAGCAAUGAAUUCAUUCAUUUGUUUACUCGUUCAAGUGGCAACUUCAUUUUGUAAACACUUUCGUUUACAUACAACUUUUGGCCCUACA---------- ------.......(((.((((((((((....)))).)))))).))).....((.(((..........(((((((......)))))))...........)))))...---------- ( -21.30, z-score = -2.10, R) >droYak2.chr2R 5785504 99 + 21139217 ------CCACCCGGAGGAAGCAAUGAAUUCAUUCAUUUGUUUACUCGUUCAAGUGGCAACUUCAUUUUGUAAACACUUUCGUUUACAUACAACUUUUGGCCCUAC----------- ------.......(((.((((((((((....)))).)))))).))).....((.(((..........(((((((......)))))))...........)))))..----------- ( -21.30, z-score = -2.09, R) >droEre2.scaffold_4845 17584606 95 - 22589142 ----------CCCGAGGAAGCAAUGAAUUCAUUCAUUUGUUUACUCGUUCAAGUGGCAACUUCAUUUUGUAAACACUUUCGUUUACAUACAACUUUUGGCCCAGC----------- ----------..((((.((((((((((....)))).)))))).)))).....(.(((..........(((((((......)))))))...........))))...----------- ( -22.20, z-score = -2.67, R) >droAna3.scaffold_12916 11039057 107 - 16180835 ------CAGUCCGCAGGAAGCAAUGAAUUCAUUCAUUUGUUUACUCGUUCAAGUGGCAACUUCAUUUUGUAAACACUUUCGUUUACAUACAACUUUUUGCUGUGUAAAAAACA--- ------......((((((((.((((((.....(((((((..........)))))))....)))))).(((((((......))))))).....)))))))).............--- ( -21.30, z-score = -1.37, R) >dp4.chr4_group4 357027 109 - 6586962 GUGCCUCUGCCCGCAGGAAGCAAUGAAUUCAUUCAUUUGUUUACUCGUUCAAGUGGCAACUUCAUUCUGUAAACACUUUCGUUUACAUACAACUUUUUGCUCUAAAAAG------- .((((.(((..((.((.((((((((((....)))).)))))).))))..).)).)))).........(((((((......))))))).....(((((((...)))))))------- ( -23.30, z-score = -2.36, R) >droPer1.super_16 666405 109 + 1990440 GUGCCUCUGCCCGCAGGAAGCAAUGAAUUCAUUCAUUUGUUUACUCGUUCAAGUGGCAACUUCAUUCUGUAAACACUUUCGUUUACAUACAACUUUUUGCUCUAAAAAG------- .((((.(((..((.((.((((((((((....)))).)))))).))))..).)).)))).........(((((((......))))))).....(((((((...)))))))------- ( -23.30, z-score = -2.36, R) >droWil1.scaffold_180703 204475 106 + 3946847 ------CGUUCUGCAGGAAGCAAUGAAUUCAUUCAUUUGUUUACUCGUUCAAGUGGCAACUUCAUUUUGUAAACACUUUCGUUUACAUAUAACUUUUUUGCUACCAAAAAAU---- ------......((..(((((((((((....)))).)))))).)..))....(((((((........(((((((......)))))))..........)))))))........---- ( -19.97, z-score = -2.06, R) >droMoj3.scaffold_6500 25741130 110 - 32352404 ------CCUGCUACAGGAAGCAAUGAAUUCAUUCAUUUGUUUACUCGCUCAAGUGGCAACUUCAUUUUGUAAACACUUUCGUUUACAUGCAACUUUUUUUGCCAGCUCGCAACAAA ------((((...))))((((((((((....)))).))))))....((...((((((((........(((((((......)))))))...........)))))).)).))...... ( -22.51, z-score = -1.51, R) >droGri2.scaffold_15126 8139049 103 - 8399593 ------GCUUUUACAGGAAGCAAUGAAUUCAUUCAUUUGUUUACUCGCUCAAGUGGCAACUUCAUUUUGUAAACACUUUCGUUUACAUGCAACUUUUUUGUGCACCCAA------- ------(((((.....)))))((((((.....(((((((..........)))))))....)))))).(((((((......)))))))((((.(......))))).....------- ( -19.90, z-score = -1.44, R) >droVir3.scaffold_12723 3217118 103 + 5802038 ------ACUGCCGCAGGAAGCAAUGAAUUCAUUCAUUUGUUUACUCGCUCAAGUGGCAACUUCAUUUUGUAAACACUUUCGUUUACAUGCAACUUUUUUCUGCACCCGA------- ------......((((((((.((((((.....(((((((..........)))))))....)))))).(((((((......)))))))........))))))))......------- ( -22.10, z-score = -1.75, R) >consensus ______CCGCCCGCAGGAAGCAAUGAAUUCAUUCAUUUGUUUACUCGUUCAAGUGGCAACUUCAUUUUGUAAACACUUUCGUUUACAUACAACUUUUUGCCCUACAAAA_______ ...............(((((.((((((....))))))(((((((......((((....))))......)))))))))))).................................... (-14.10 = -14.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:51:47 2011