| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,275,488 – 19,275,580 |
| Length | 92 |
| Max. P | 0.774449 |
| Location | 19,275,488 – 19,275,580 |
|---|---|
| Length | 92 |
| Sequences | 7 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 73.53 |
| Shannon entropy | 0.47795 |
| G+C content | 0.55505 |
| Mean single sequence MFE | -29.91 |
| Consensus MFE | -18.18 |
| Energy contribution | -17.56 |
| Covariance contribution | -0.63 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.774449 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 19275488 92 + 23011544 CGUCUAACCGCAGGCGGAACUGGCAAAAUCCAA----AUCGAAUGGAAUGGAUAUGGUCGAGUGUCCCGGCAACGUAUCCAAUUGUCGACUUGCGG .......((((((((((...........((((.----......)))).((((((((((((.......))))..))))))))....))).))))))) ( -29.40, z-score = -1.39, R) >droSim1.chr2L 18966510 79 + 22036055 CGUCUAACCGCAGGCGGAACUGGCAAAAUCCAA----AUCGAAUGGAAUGGAUACGGUCGAGU-------------AUCCAAUUGUCGACUUGCGG .......((((((((((...........((((.----......)))).(((((((......))-------------)))))....))).))))))) ( -26.40, z-score = -2.51, R) >droSec1.super_7 2904100 92 + 3727775 CGUCUAACCGCAGGCGGAACUGGCAAAAUCCAA----AUCGAAUGGAAUGGAUACGGUCGAGUGUCCCGGCAACGUAUCCAAUUGUCGACUUGCGG .......((((((((((...........((((.----......)))).((((((((((((.......))))..))))))))....))).))))))) ( -31.20, z-score = -1.82, R) >droYak2.chr2R 5783156 86 + 21139217 CGUCUAACCGCAGGCGGAACUGGCAAAA----------UCGCAUGGAAUGGAUAUGGCCGAAUGUCCUGGCAACGUAUCCGAUUGUCGACUUGCGG .......((((((((((.....((....----------..))......((((((((((((.......))))..))))))))....))).))))))) ( -27.80, z-score = -0.99, R) >droEre2.scaffold_4845 17582467 96 - 22589142 CGUCUAACCGCAGGCGGAACUGGCAAACUCGAAUGGCAUGGCAUGGAAUGGAUAUGGUCGAAUGUCCUGGCAACGUAUCCAAUUGUCGACUUGCGG .......((((((((.....((.((........)).)).((((((((..((((((......)))))).(....)...))))..))))).))))))) ( -27.80, z-score = -0.24, R) >dp4.chr4_group4 354661 81 - 6586962 UGUCCAACCGCAGGCGAG--UGGUGGGG---------AUGAGGGGGAAUGGAUGCCGCUGUCC----CAGCAACCUAUCCAACUGUCGGCUUGUGG .......((((((((..(--..((..((---------((.(((..(...((((......))))----...)..))))))).))..)..)))))))) ( -31.50, z-score = -0.60, R) >droPer1.super_16 664064 81 + 1990440 UGUCCAACCGCAGGCGAG--UGGUGGGG---------AUGGGGGGGAAUGGAUCCGGCUGUCC----CAGCAACCUAUCCAACUGUCGGCUUGUGG .......((((((((..(--..((..((---------(((((.((((.((....))....)))----).....))))))).))..)..)))))))) ( -35.30, z-score = -1.29, R) >consensus CGUCUAACCGCAGGCGGAACUGGCAAAAUC_AA____AUCGAAUGGAAUGGAUACGGUCGAGUGUCCCGGCAACGUAUCCAAUUGUCGACUUGCGG .......((((((((((......)........................((((((..((((.......))))....)))))).....)).))))))) (-18.18 = -17.56 + -0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:51:45 2011