| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,274,644 – 19,274,744 |
| Length | 100 |
| Max. P | 0.670396 |
| Location | 19,274,644 – 19,274,744 |
|---|---|
| Length | 100 |
| Sequences | 10 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 69.31 |
| Shannon entropy | 0.61467 |
| G+C content | 0.45519 |
| Mean single sequence MFE | -22.59 |
| Consensus MFE | -8.18 |
| Energy contribution | -7.93 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.670396 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 19274644 100 + 23011544 ----GGCCGUUUACGCAGCAUCCAAAUGAAAAGCGUGACAAAUUGACAU----AUCGAUUUGCAUAUUUGGCACACCUA-ACUAUCCCUGACCCAGGGA--AUCUGUCCAG----- ----.((((.((((((..(((....)))....))))))((((((((...----.))))))))......)))).......-....((((((...))))))--..........----- ( -25.50, z-score = -2.12, R) >droSim1.chr2L 18965672 100 + 22036055 ----GGCCGUUUACCCAGCAUCCAAAUGAAAAGCGUGACAAAUUGACAU----AUCGAUUUGCAUAUUUGGCACACCUA-ACUAUCCCUGACCCAAGUC--AUCCGUCCAG----- ----((.((............((((((.......(((.((((((((...----.)))))))))))))))))........-........((((....)))--)..)).))..----- ( -16.51, z-score = -0.60, R) >droSec1.super_7 2903286 100 + 3727775 ----GGCCGUUUACCCAGCAUCCAAAUGAAAAGCGUGACAAAUUGACAU----AUCGAUUUGCAUAUUUGGCACACCUA-ACAAUUCCUGACCCAAGUC--AUCCGUCCAG----- ----((.((............((((((.......(((.((((((((...----.)))))))))))))))))........-........((((....)))--)..)).))..----- ( -16.51, z-score = -0.41, R) >droYak2.chr2R 5782381 94 + 21139217 ----GGACGUUUACCUAGCAUCCAAAUGAAAAGCGUGACAAAUUGGCAU----AUCGAUUUGCAUGCUUGGCACACCUA-ACUAUCCCUGACCCAAGAA--AUCC----------- ----(((.(((.....))).)))...((..(((((((.((((((((...----.)))))))))))))))..))......-...................--....----------- ( -21.90, z-score = -2.22, R) >droEre2.scaffold_4845 17581691 99 - 22589142 ----GGCCGUUUACCCAGCAUCCAAACGAAAAGCGUGACAAAUUGGCAU----AUCGAUUUGCAUUUCUGGCACACCUA-ACUGUGCCUGACCCAAGAA--GUCCAGCCA------ ----((((((((...........)))))......(.(((...((((((.----.......)))...((.((((((....-..)))))).))..)))...--)))).))).------ ( -23.60, z-score = -0.93, R) >droAna3.scaffold_12916 11036064 101 - 16180835 ----AGCUAUUUGCCCGGCAUCCGAAUGAAAAGCGUGACAAAUUGACAU----AUCGAUUUGCAUGUUUCGCAUACCUA-ACCAUCCCUGACCCAAGGA-AUCGCCCCCAG----- ----.((.....))..(((......(((..(((((((.((((((((...----.)))))))))))))))..))).....-......(((......))).-...))).....----- ( -25.30, z-score = -3.12, R) >dp4.chr4_group4 353797 108 - 6586962 ----AGCUAUUUACCCAACG--CAAAUGAAAAGCGUGACAAAUUGACAUGCAUAUCGAUUUGCAUGUUUCACAUACCUA-ACCAUCCCUGACCCCAGAACGGUAUGGCCAUGGCC- ----.(((((..........--...(((..(((((((.((((((((........)))))))))))))))..))).....-.(((((((((....)))...)).))))..))))).- ( -25.20, z-score = -1.90, R) >droPer1.super_16 663212 108 + 1990440 ----AGCUAUUUACCCAACG--CAAAUGAAAAGCGUGACAAAUUGACAUGCAUAUCGAUUUGCAUGUUUCACGUACCUA-ACCAUCCCUGACCCCAGGACGGUAUGGCCAUGGCC- ----.(((((....(((...--..........((((((......((((((((........)))))))))))))).....-(((...((((....))))..))).)))..))))).- ( -29.90, z-score = -2.58, R) >droVir3.scaffold_12723 3213794 107 + 5802038 GUCCAUUUCCGCAGCUGACAUACUUACUAAUAGCGUGACAAAUUGACGU----AUCGAUUUGCAUGUUUUGCAUAG----ACAAAGCAAAAUAACA-AAGGGACUAACCAUACCCG ((((.....(((.((((.............))))))).((((((((...----.))))))))..((((((((....----.....))))))))...-...))))............ ( -21.02, z-score = -1.39, R) >droGri2.scaffold_15126 8135994 103 - 8399593 ---------AACAGCUGACAUACUUGCUAAUAGCAUGACAAAUUGACGU----AUCGAUUUGCAUGUUUCGCCCAGCCAGACAAGGGAAAGUAAUACAACGGUCUAACCAAAACCG ---------...........(((((......((((((.((((((((...----.))))))))))))))...(((..........))).)))))......((((.........)))) ( -20.50, z-score = -0.88, R) >consensus ____GGCCGUUUACCCAGCAUCCAAAUGAAAAGCGUGACAAAUUGACAU____AUCGAUUUGCAUGUUUGGCACACCUA_ACUAUCCCUGACCCAAGAA__GUCCGGCCAG_____ ..................................(((.((((((((........)))))))))))................................................... ( -8.18 = -7.93 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:51:44 2011