| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,265,164 – 19,265,252 |
| Length | 88 |
| Max. P | 0.983789 |
| Location | 19,265,164 – 19,265,252 |
|---|---|
| Length | 88 |
| Sequences | 6 |
| Columns | 88 |
| Reading direction | forward |
| Mean pairwise identity | 64.55 |
| Shannon entropy | 0.69781 |
| G+C content | 0.40972 |
| Mean single sequence MFE | -17.32 |
| Consensus MFE | -5.64 |
| Energy contribution | -7.44 |
| Covariance contribution | 1.81 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.15 |
| SVM RNA-class probability | 0.983789 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 19265164 88 + 23011544 UUUUCCGCUCGAUAUAGCAGCACAUAUCAUUCACACAAUUUGGCCCAUACUCGAAAACAUUACUUGUGGGCCAGAAUAAAGAGCAAAC ......(((((((((........)))))..........(((((((((((...............))))))))))).....)))).... ( -25.46, z-score = -5.16, R) >droSim1.chr2L 18955246 88 + 22036055 UUUCCCGCUCGAUAUAGCAGCACAUAUCAUUCACACAAUUUGGCCCAUACUCGAAAACAUUACUUGUGGGCCAGAACAAAAAGCAAAC ......(((.(((((........)))))..........(((((((((((...............)))))))))))......))).... ( -21.06, z-score = -3.84, R) >droSec1.super_7 2893983 88 + 3727775 UUUUCCGCUCGAUAUAGCAGCACAUAUCAUUCACACAAUUUGGCCCAUACUCGAAAACAUUACUUGUGGACCAGAACAAAAAGCAAAC ......(((.(((((........)))))..........(((((.(((((...............))))).)))))......))).... ( -13.96, z-score = -1.76, R) >droEre2.scaffold_4845 17572271 88 - 22589142 UUUUCCGCUCGAUAUAGCAGCACAUAUCAUUCACACAAUUUGGCCCAUACCCGAAAACAUUACUUGUGGGCCAGAACAAAAAGCAAAC ......(((.(((((........)))))..........(((((((((((...............)))))))))))......))).... ( -21.06, z-score = -3.84, R) >droAna3.scaffold_12916 11025767 75 - 16180835 UUUUGAACUUUAAAUAACUACAUGUAUCAGACUCUCU-CUUGGCAAUCAAUCCAACAUUUACCUUGUGAACGAAAC------------ (((((.................(((...(((.....)-))..))).....(((((........))).)).))))).------------ ( -3.30, z-score = 1.58, R) >droMoj3.scaffold_6500 25724278 88 - 32352404 CGCUCGUUCCGCUCAAUUUGUGUGGAAAACUCGCUCGAUUUGCCACUUUUCCCAUGCACUUACAACUGAGCAUGUGACUAAGCCACAU ..........(((((.((.((((((((((...((.......))...))))))...))))....)).)))))(((((.......))))) ( -19.10, z-score = -1.12, R) >consensus UUUUCCGCUCGAUAUAGCAGCACAUAUCAUUCACACAAUUUGGCCCAUACUCGAAAACAUUACUUGUGGGCCAGAACAAAAAGCAAAC ......................................(((((((((((...............)))))))))))............. ( -5.64 = -7.44 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:51:40 2011