| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,241,678 – 19,241,782 |
| Length | 104 |
| Max. P | 0.842425 |
| Location | 19,241,678 – 19,241,782 |
|---|---|
| Length | 104 |
| Sequences | 11 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 86.75 |
| Shannon entropy | 0.29570 |
| G+C content | 0.41652 |
| Mean single sequence MFE | -27.53 |
| Consensus MFE | -22.36 |
| Energy contribution | -22.63 |
| Covariance contribution | 0.27 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.842425 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 19241678 104 + 23011544 -GCUGCGUCUUGGAAUUUUCCUCAAGUGGCGCAUAAUGAGCGCCACGCGGCGUAUGAUUAAUAUUUUUAUCGUCCUUAAUUCCCGCUGCAUUAUGAUUACAUAUU -((.(((....((((((........(((((((.......)))))))..((((.((((.........))))))))...))))))))).))..((((....)))).. ( -29.50, z-score = -2.13, R) >droEre2.scaffold_4845 17549447 104 - 22589142 -GCUGCGUCUUGGAAUUUUCCUCAAGUGGCGCAUAAUGAGCGCCACGCGGCGUAUGAUUAAUAUUUUUAUCGUCCUUAAUUCCCGCUGCAUUAUGAUUACAUAUU -((.(((....((((((........(((((((.......)))))))..((((.((((.........))))))))...))))))))).))..((((....)))).. ( -29.50, z-score = -2.13, R) >droYak2.chr2R 5749350 104 + 21139217 -GCUGCGUCUUGGAAUUUUCCUCAAGUGGCGCAUAAUGAGCGCCACGCGGCGUAUGAUUAAUAUUUUUAUCGUCCUUAAUUCCCGCUGCAUUAUGAUUACAUAUU -((.(((....((((((........(((((((.......)))))))..((((.((((.........))))))))...))))))))).))..((((....)))).. ( -29.50, z-score = -2.13, R) >droSec1.super_7 2864984 104 + 3727775 -GCUGCGUCUUGGAAUUUUCCUCAAGUGGCGCAUAAUGAGCGCCACGCGGCGUAUGAUUAAUAUUUUUAUCGUCCAUAAUUCCCGCUGCAUUAUGAUUACAUAUU -((.(((....((((((........(((((((.......)))))))(.((((.((((.........)))))))))..))))))))).))..((((....)))).. ( -29.90, z-score = -2.07, R) >droSim1.chr2L 18931759 104 + 22036055 -GCUGCGUCUUGGAAUUUUCCUCAAGUGGCGCAUAAUGAGCGCCACGCGGCGUAUGAUUAAUAUUUUUAUCGUCCUUAAUUCCCGCUGCAUUAUGAUUACAUAUU -((.(((....((((((........(((((((.......)))))))..((((.((((.........))))))))...))))))))).))..((((....)))).. ( -29.50, z-score = -2.13, R) >dp4.chr4_group4 323754 103 - 6586962 -GCUUU-CCUCGGAAUUUUCCUCGAGUGGCGCAUAAUGAGCGCCACGCGGCGUAUGAUUAAUAUUUUUAUCGUCUUUAAUUCCCGCUGCAUUAUGAUUACAUAUU -.....-....(((....)))....(((((((.......)))))))((((((...((((((..............))))))..))))))..((((....)))).. ( -27.94, z-score = -2.15, R) >droPer1.super_16 633595 103 + 1990440 -GCUUU-CCUCGGAAUUUUCCUCGAGUGGCGCAUAAUGAGCGCCACGCGGCGUAUGAUUAAUAUUUUUAUCGUCUUUAAUUCCCGCUGCAUUAUGAUUACAUAUU -.....-....(((....)))....(((((((.......)))))))((((((...((((((..............))))))..))))))..((((....)))).. ( -27.94, z-score = -2.15, R) >droAna3.scaffold_12916 10994596 105 - 16180835 CGUUGCGUCUUGGAAUUUUCCUCAAGUGGCGCAUAAUGAGCGCCACGCGGCGUAUGAUUAAUAUUUUUAUCGUCUUUAAUUCCCGCUGCAAUAUGAUUAUAUAUU .((((((.(..((((((........(((((((.......)))))))..((((.((((.........))))))))...)))))).).))))))............. ( -29.10, z-score = -1.93, R) >droVir3.scaffold_12723 3183477 102 + 5802038 --GCUUGGCUUACAAAUUUUCUCAAGAGCCGCAUAAUGAGCGUCGCGCGGCGUAUGAUUAAUAUUUU-GGCGUCUUUUAUUCGCGAUGUGUUAUGAUUACAUAUU --....(((((..............))))).((((((..((((((((.(((((..(((....)))..-.))))).......)))))))))))))).......... ( -24.94, z-score = -0.11, R) >droMoj3.scaffold_6500 25693469 85 - 32352404 -------------------UCUCGAGUGGCGCAUAAUGAGCGCCACGCGGCGUAUGAUUAAUAUUUU-GGCGUCUUUAAUUUGUGCUGCAUUAUGAUUACACAUU -------------------......(((((((.......)))))))((((((...((((((......-.......))))))..))))))................ ( -24.82, z-score = -1.24, R) >droGri2.scaffold_15126 8107320 101 - 8399593 --CGUUUGCUAACAAAUUUUCUCAAGUGCCGCAUAAUGAGGGCCACGCGGCGUAUGAUUAAUAUUUG-GGC-UCUUUAAUUCGCGCUGCAUUAUGAUUACAUAUU --(((.(((...(((((((..(((..((((((..............))))))..)))..)).)))))-(((-.(........).))))))..))).......... ( -20.14, z-score = 0.90, R) >consensus _GCUGCGUCUUGGAAUUUUCCUCAAGUGGCGCAUAAUGAGCGCCACGCGGCGUAUGAUUAAUAUUUUUAUCGUCUUUAAUUCCCGCUGCAUUAUGAUUACAUAUU .....................(((.(((((((.......)))))))((((((...((((((..............))))))..))))))....)))......... (-22.36 = -22.63 + 0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:51:37 2011