| Sequence ID | dm3.chr2L |
|---|---|
| Location | 1,815,628 – 1,815,722 |
| Length | 94 |
| Max. P | 0.574338 |
| Location | 1,815,628 – 1,815,722 |
|---|---|
| Length | 94 |
| Sequences | 8 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 66.14 |
| Shannon entropy | 0.62755 |
| G+C content | 0.49328 |
| Mean single sequence MFE | -21.68 |
| Consensus MFE | -9.44 |
| Energy contribution | -9.89 |
| Covariance contribution | 0.46 |
| Combinations/Pair | 1.60 |
| Mean z-score | -1.02 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.574338 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 1815628 94 + 23011544 CUUUCAUCUCCCACUUUCCGAUUUU-------CCACCUUAAAGGUUUCCCAGUGGUCAGCUCGCAGCUGGA-------------AAAACUUCGCCCGGCGACAGCUGAACAAAU----- ..........(((((....((....-------((........))..))..)))))((((((.(..(((((.-------------..........)))))..)))))))......----- ( -22.60, z-score = -1.30, R) >droSim1.chr2L 1799728 94 + 22036055 CUUUCAUCUCCCACUUUCCGAUUUU-------CCACCUUAAAGCUUUCCCAGUGGUCAGCUCGCAGCUGGA-------------AAAACUUCGCCCGGCGACAGCUGAACAAAU----- ..........(((((......(((.-------.......)))........)))))((((((.(..(((((.-------------..........)))))..)))))))......----- ( -19.84, z-score = -0.83, R) >droSec1.super_14 1762322 94 + 2068291 CUUUCAUCUUCCACUUUCCGAUUUU-------CCACCUUAAAGCUUUCCCAGUGGUCAGCUCGCAGCUGGA-------------AAAACUUCGCCCGGCGACAGCUGAACAAAU----- ..........(((((......(((.-------.......)))........)))))((((((.(..(((((.-------------..........)))))..)))))))......----- ( -19.64, z-score = -0.77, R) >droYak2.chr2L 1788635 101 + 22324452 CUUUCACCUCCCACUUUCCGAUCUUUCCACUUCCACCUUAAAGCUUUCCCAGUGGUCAGCUCGCAGCUGGA-------------AAAACUUCGCCCGGCGACAGCUGAACAAAU----- ..........(((((....((.((((.............)))).))....)))))((((((.(..(((((.-------------..........)))))..)))))))......----- ( -20.62, z-score = -1.07, R) >droEre2.scaffold_4929 1860571 94 + 26641161 CUUUCAUCUCCCACUUUCCGAUUUU-------CCACCUUAAAGCUUUCCCAGUGGUCAGCUCGCAGCUGGA-------------AAAACUUCGCCCGGCGACAGCUGAACAAAU----- ..........(((((......(((.-------.......)))........)))))((((((.(..(((((.-------------..........)))))..)))))))......----- ( -19.84, z-score = -0.83, R) >droAna3.scaffold_12916 408587 85 - 16180835 UUUUCUUCUAUU-UUUUCCGAUUUU------UCCGCCUUAAAGCUCUCCCUGUGGUCAGUUGG----------------------AAACUUCUCCCGGCGACAGCUGAAAAAAU----- ............-.(((((((((..------.((((...............))))..))))))----------------------))).......((((....)))).......----- ( -16.06, z-score = -0.50, R) >dp4.chr4_group3 3197691 108 - 11692001 CUCGGAUCCGCCGUUUCUCUUCUCC------AUCACCCUUAAACCUGUCGGUUGGUCAGUUCUCCGCUAGAGUCCCUUAGCUGGAAAACUUCCCCCAGUGACAGCUGGAAAAAU----- ..(((.....))).........(((------(((((.....((((....))))((..((((.((((((((......))))).))).))))..))...))))....)))).....----- ( -25.00, z-score = -0.42, R) >droWil1.scaffold_180708 697799 86 - 12563649 --------------CUCGCAUUUGUC-----UUCGUCUCCAGGAAUUUCC-UAAGCUGGCUUCCAACUGGGC-------------AGCUUCUGCCCAAGGACGACAAGUAGAGUGAAAU --------------.((((.((((.(-----((.((((((.((((...((-......)).))))...(((((-------------((...))))))).))).))))))))))))))... ( -29.80, z-score = -2.44, R) >consensus CUUUCAUCUCCCACUUUCCGAUUUU_______CCACCUUAAAGCUUUCCCAGUGGUCAGCUCGCAGCUGGA_____________AAAACUUCGCCCGGCGACAGCUGAACAAAU_____ ................................((((...............))))((((((....(((((........................)))))...))))))........... ( -9.44 = -9.89 + 0.46)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:09:18 2011