| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,234,910 – 19,235,000 |
| Length | 90 |
| Max. P | 0.978136 |
| Location | 19,234,910 – 19,235,000 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 64.04 |
| Shannon entropy | 0.66451 |
| G+C content | 0.39154 |
| Mean single sequence MFE | -20.23 |
| Consensus MFE | -10.73 |
| Energy contribution | -10.43 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.99 |
| SVM RNA-class probability | 0.978136 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 19234910 90 - 23011544 GGCAAGAAUAAUGGAUGGAUACAUUCAUUUGGCAAUCGUGGUGAACCACAUAAGUAUGUAAUUGAUAUUUUAAUCAAAACGUUGCAGGCC------------ (((......((((((((....))))))))..(((((.((((....))))............(((((......)))))...)))))..)))------------ ( -24.90, z-score = -2.85, R) >droPer1.super_16 624186 97 - 1990440 --UGUGGACAAU--AUUGAUGGCCUUGUUGGACGUUCA-AACCAGUUACAGAUUUGGGUAAGAAAAGAGUGAGUAGCAAGGUGGAUGAGUCAAAAACAGGAC --(((.(((...--.(((.(.(((((((((.((.(((.-..((((........))))....)))....))...))))))))).).))))))....))).... ( -17.50, z-score = 0.24, R) >droEre2.scaffold_4845 17542361 71 + 22589142 UGCAGAAA-AAUGGAUGGAUGCAUUCAUUUGGCAAUCGCGGUGAGCCGCAUAAGUAGGUAAUUGAUAUGGUA------------------------------ (((....(-((((((((....))))))))).)))...((((....)))).......................------------------------------ ( -18.50, z-score = -1.46, R) >droYak2.chr2R 5742648 89 - 21139217 UGCAAGAAUAAUGGAUGGAUGCAUUCAUUGGGCAACGGUGGCGAACCACAUAAGUAGGUAAUUGAUAUUUU-AUCAAAACAUUUCAACAU------------ (((..(..(((((((((....)))))))))..)....((((....))))....)))(((((........))-)))...............------------ ( -17.70, z-score = -1.14, R) >droSec1.super_7 2858230 90 - 3727775 GGCAAGAAUAAUGGAUGGAUCCAUUCAUUUGGCAAUCGUGGUGAACCACAUAAGUAGGUAAUUGAUACCUUAAUCAAAACAUCGCAGCUU------------ (((..(...((((((((....))))))))...)....((((((.(((((....)).)))..(((((......)))))..)))))).))).------------ ( -23.30, z-score = -2.14, R) >droSim1.chr2L 18925386 90 - 22036055 GGCAAGAAUAAUGGAUGGAUGCAUUCAUUUGGCAAUCGUGGUGAACCACAUAAGUAGGUAAAUGAUACUUUAAUCAAAACGUGGCAGCUU------------ (((......((((((((....))))))))((.((...((((....)))).............((((......)))).....)).))))).------------ ( -19.50, z-score = -0.81, R) >consensus GGCAAGAAUAAUGGAUGGAUGCAUUCAUUUGGCAAUCGUGGUGAACCACAUAAGUAGGUAAUUGAUAUUUUAAUCAAAACGUGGCAGCUU____________ .((......((((((((....))))))))..))....((((....))))..................................................... (-10.73 = -10.43 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:51:36 2011