| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,231,176 – 19,231,276 |
| Length | 100 |
| Max. P | 0.821192 |
| Location | 19,231,176 – 19,231,276 |
|---|---|
| Length | 100 |
| Sequences | 10 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 63.96 |
| Shannon entropy | 0.74005 |
| G+C content | 0.50541 |
| Mean single sequence MFE | -21.99 |
| Consensus MFE | -7.91 |
| Energy contribution | -7.69 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.70 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.821192 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 19231176 100 + 23011544 GCGUCAGCUUGCUGACCAAACAACUUUUUGCAUGUUUUCCUUACAAACACCCGCAUCGAAAGCAGGUGGAACCGCCUGCGUCGC-UUUUCUCACUUUUCCC---- (((((((....)))))............(((.(((((.......)))))...)))......(((((((....)))))))...))-................---- ( -25.00, z-score = -2.13, R) >droSim1.chr2L 18921701 100 + 22036055 GCGUCAGCUUGCUGACCAAACAACUUUUUGCGUGUUUUCCUUACAAACACCCGCAUCGAAAGCAGGUGGAACCGCCUGCGUCGC-UUUUCUCACUUUUCCC---- (((((((....))))).............(.((((((.......)))))).)))..(((..(((((((....))))))).))).-................---- ( -27.80, z-score = -2.59, R) >droSec1.super_7 2854545 100 + 3727775 GCCUCAGCUUGCUGACCAAACAACUUUUUGCGUGUUUUCCUUACAAACACCCGCAUCGAAAGCAGGUGGAACCGCCUGCGUCGC-UUUUCUCACUUUUCCC---- ...((((....)))).............(((((((((.......))))))..))).(((..(((((((....))))))).))).-................---- ( -23.90, z-score = -1.79, R) >droYak2.chr2R 5738945 100 + 21139217 GCGUCAGCUUGCUGAUUAAACAACUUUUUGCGUGUUUUUCUUACAAACACCCGCAUCGAAAACAGGUGGAACCGCCUGCGUCGC-UUUUCUCACUUUUCCC---- (((((((....))))................((((((.......)))))).)))..(((...((((((....))))))..))).-................---- ( -23.20, z-score = -1.64, R) >droEre2.scaffold_4845 17538830 99 - 22589142 GCGUCAGCUUGCUGACCAAACAACUUUUUGCGUGUUUUGCUUCCAAACACCCGCAUUGAAAACAGGUGGAACCGCCUGCGUCGC-UUUUCCCACUUUUCC----- (((((((....)))))............((((.((((((....)))).)).))))..((...((((((....))))))..))))-...............----- ( -25.20, z-score = -1.59, R) >droAna3.scaffold_12916 10982670 95 - 16180835 GCGUCAGCUUGCUGACCAAACAACUUUUUGCGUGUUUUGGUGUU---------CACCGAAA-CAGGUGGCGUUACCUCUGCCGCCUUUUCCCACUUUUCCUCACU (.(((((....))))))...............(((((((((...---------.)))))))-))(((((((.......))))))).................... ( -28.30, z-score = -2.96, R) >dp4.chr4_group4 310477 83 - 6586962 CCGUCCGCUUGCUGACCAAACA---CUCCGCUCCACUCUAUUGC---------UGGCCAAAACAGGUGGCGCUGCCUUU-UCCCACUUUCCCAUUC--------- .((.(((((((.((.(((....---....((...........))---------))).))...)))))))))........-................--------- ( -12.00, z-score = 1.05, R) >droPer1.super_16 620201 83 + 1990440 CCGUCCGCUUGCUGACCAAACA---CUCCGCUCCACUCUAUUGC---------UGGCCAAAACAGGUGGCGCUGCCUUU-UCCCACUUUCCCAUUC--------- .((.(((((((.((.(((....---....((...........))---------))).))...)))))))))........-................--------- ( -12.00, z-score = 1.05, R) >droWil1.scaffold_180703 3683446 89 - 3946847 GCGUCAGCUUGUUUCUCCACCAACAUUUUUGUUUUCUUUUUGGCUUUGCUGAACGUCCAAA-CAGGUGUUGCUGACUUUUUUCCAUUUCC--------------- ..((((((.........((((((((....)))).....((..((...))..))........-..))))..))))))..............--------------- ( -16.60, z-score = -1.21, R) >droGri2.scaffold_15126 8096071 91 - 8399593 GCAUCAGUUGGUUGACCAAACAACUUUCUGUUUUAGUUUUGUUGAAACAGGUGCCGCCGACUCCAGCUUCAAAGCCGCCGGCGCCUUUUCC-------------- ....(((..(((((......)))))..))).............((((.((((((((.((......(((....))))).)))))))))))).-------------- ( -25.90, z-score = -1.64, R) >consensus GCGUCAGCUUGCUGACCAAACAACUUUUUGCGUGUUUUUCUUACAAACACCCGCAUCGAAAACAGGUGGAACCGCCUGCGUCGC_UUUUCCCACUUUUCC_____ ..(((((....)))))...............................................(((((....)))))............................ ( -7.91 = -7.69 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:51:34 2011