| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,209,779 – 19,209,873 |
| Length | 94 |
| Max. P | 0.925603 |
| Location | 19,209,779 – 19,209,873 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 92.15 |
| Shannon entropy | 0.13896 |
| G+C content | 0.31466 |
| Mean single sequence MFE | -13.86 |
| Consensus MFE | -11.64 |
| Energy contribution | -11.56 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.28 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.32 |
| SVM RNA-class probability | 0.925603 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 19209779 94 + 23011544 UAUGAAAAAAUAUCACAAAAAAUACUUUGUGGCCAAUCUGCAA-CGCAGGAUGAAACCAAUGCCACAAAAAACUUUCAACUAACUCUUAAAAGUU .........................((((((((((.(((((..-.))))).))........)))))))).((((((.((.......)).)))))) ( -14.70, z-score = -2.18, R) >droEre2.scaffold_4845 17517882 92 - 22589142 --UAUAAAAAUAUCACAAAAAAUACUUUGUGGCCAAUCUGCAAACGCAGGA-AAAAGCAAUCCCACAAAAAACUUUUUACUAACUCUUAAAAGUU --...........((((((......))))))((...(((((....))))).-....))............(((((((...........))))))) ( -12.70, z-score = -2.15, R) >droYak2.chr2R 5717113 93 + 21139217 UAUCAAAAAAUAUCACAAAAAAUACUUUGUGGCCAAUCUGCAA-CGCAGAA-AAAACCAAUCCCACAAAAAACUUUUGACUAACUCUUAAAAGUU ............(((((((......)))))))....(((((..-.))))).-..................(((((((((.......))))))))) ( -14.30, z-score = -3.74, R) >droSec1.super_7 2833295 94 + 3727775 UAUGAAAAAAUAUCACAAAAAAUACUUUGUGGCCAAUCUGCAG-CGCAGGACGAAACCAAUGCCACAAAAAACUUUCAACUAACUCUUAAAAGUU .........................((((((((...(((((..-.)))))..(....)...)))))))).((((((.((.......)).)))))) ( -13.70, z-score = -1.32, R) >droSim1.chr2L 18899930 94 + 22036055 UAUGAAAAAAUAUCACAAAAAAUACUUUGUGACCAAUCUGCAG-CGCAGGAUGAAACCAAUGCCACAAAAAACUUUCAACUAACUCUUAAAAGUU ..(((((.....(((((((......))))))).((.(((((..-.))))).))....................)))))................. ( -13.90, z-score = -1.98, R) >consensus UAUGAAAAAAUAUCACAAAAAAUACUUUGUGGCCAAUCUGCAA_CGCAGGA_GAAACCAAUGCCACAAAAAACUUUCAACUAACUCUUAAAAGUU ..(((((.....(((((((......)))))))....(((((....))))).......................)))))................. (-11.64 = -11.56 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:51:32 2011