| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,207,766 – 19,207,860 |
| Length | 94 |
| Max. P | 0.542377 |
| Location | 19,207,766 – 19,207,860 |
|---|---|
| Length | 94 |
| Sequences | 12 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 77.86 |
| Shannon entropy | 0.42585 |
| G+C content | 0.43351 |
| Mean single sequence MFE | -20.45 |
| Consensus MFE | -11.37 |
| Energy contribution | -11.59 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.542377 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 19207766 94 + 23011544 UAAAUAUAACAAGAGGCGACGUCGCAAGAUUUUCCAACAGAC---CACGUCGUCCACUCUGUUCCCAAAGACAUAUU-AAAUGGUAGCGCCUAAAAAC--------------------- .............((((((((((....))).........(((---...))))))......(((.(((..........-...))).)))))))......--------------------- ( -16.62, z-score = -1.18, R) >droGri2.scaffold_15126 8073338 115 - 8399593 UAAAUACAACAAGAGGCGACGUCGGAAGAUUUCGCAACAGAC---GACGUCUGCAACUCUGUUUCCAAAGACAUAUUUAAAUUAUAGCGCCUAAAGAGGGCGCCUAAG-AAGCGAUAGU ...........((((((((.(((....))).))))..(((((---...)))))...))))(((((.......(((.......))).((((((.....))))))....)-))))...... ( -33.00, z-score = -3.17, R) >droMoj3.scaffold_6500 25654248 114 - 32352404 UAAAUACAACAAGAGGCGACGUCGCAAGAUUUCACAGCAAAC---GACGUCCGCAACUCUGUUUCCAAAGACAUAUUUAAAUUAUAGCGCUUAAGG--GGCGCCUAAGUAAACGCCAAU ....(((((((.((((((((((((.................)---))))).)))..))))))).......................(((((.....--)))))....)))......... ( -23.83, z-score = -1.02, R) >droVir3.scaffold_12723 3150307 113 + 5802038 UAAAUAUAACAAAAGGCGACGUCGUAAGAUUUCGCAGCAAAC---GAUGUCCGCAACUCUGUUCCCAAAGACAUAUUUAAAUUAAAGCGCCUAAGG--GGCGUCUAAG-AAGCGAUAAU ...............((((.(((....))).)))).......---..((((.((.....((((......)))).............(((((.....--))))).....-..)))))).. ( -23.60, z-score = -0.71, R) >droWil1.scaffold_180703 3636716 99 - 3946847 UAAAUACAACAAGAGGCGACGUCGUAAGAUUUACCAACAGGCUAACACGUCAGCCACAUUGUUUCCAAAGACAUAUUUCACGGGGGAUAUAUAAGUUAC-------------------- .......(((....((((((((.((.((.....((....)))).))))))).)))....(((..((...((......))...))..))).....)))..-------------------- ( -19.20, z-score = -1.89, R) >droPer1.super_16 595451 93 + 1990440 UAAAUACAACAAGAGGCGACGUCGCAAGAUAUUCCAGCAGAC---CACGUCGUCCACUCUGUUCCCAAAGACAUAUUUAAAUGGUAGCGCCUAGAG----------------------- .............((((((((((....))).........(((---...))))))......(((.(((..............))).)))))))....----------------------- ( -17.14, z-score = -0.78, R) >dp4.chr4_group4 285851 93 - 6586962 UAAAUACAACAAGAGGCGACGUCGCAAGAUAUUCCAGCAGAC---CACGUCGUCCACUCUGUUCCCAAAGACAUAUUUAAAUGGUAGCGCCUAGAG----------------------- .............((((((((((....))).........(((---...))))))......(((.(((..............))).)))))))....----------------------- ( -17.14, z-score = -0.78, R) >droAna3.scaffold_12916 10959577 95 - 16180835 UAAAUACAACAAGAGGCGGCGUCGCAAGAUUUUCCAGCAGAC---CACGUCGGCCACCUUGAAUCCAAAGACAUAUUUAAAAGGUAGCGUCUAGUUAU--------------------- .......(((.(((.((((((((....))).........(((---...))).)))(((((....................))))).)).))).)))..--------------------- ( -21.75, z-score = -1.88, R) >droEre2.scaffold_4845 17515981 94 - 22589142 UAAAUACAACAAGAGGCGCCGUCGCAAGAUUUUCCAGCAGAC---AACGUCGUCCACUUUGUUCCCAAAGACAUAUU-AAAUGGUAGCGCCUAAAUAC--------------------- .............((((((.(((....)))...(((...(((---......)))..(((((....))))).......-...)))..))))))......--------------------- ( -21.70, z-score = -2.67, R) >droYak2.chr2R 5715139 94 + 21139217 UAAAUAUAACAAGAGGCGACGUCGCAAGAUUUUCCAGCAGAC---CACGUCGUCCACUUUGUUCCCAAAGACAUAUU-AAAUGGUAGCGCCUAAAUAC--------------------- .............(((((.((((....)))...(((...(((---......)))..(((((....))))).......-...)))..))))))......--------------------- ( -18.20, z-score = -1.46, R) >droSec1.super_7 2831404 94 + 3727775 UAAAUAUAACAAGAGGCGACGUCGCAAGAUUUUCCAGCAGAC---CACGUCGUCCACUCUGUUCCCAAAGACAUAUU-AAAUGGUAGCGCCUAAAAAC--------------------- .............((((((((((....))).........(((---...))))))......(((.(((..........-...))).)))))))......--------------------- ( -16.62, z-score = -0.87, R) >droSim1.chr2L 18897969 94 + 22036055 UAAAUAUAACAAGAGGCGACGUCGCAAGAUUUUCCAGCAGAC---CACGUCGUCCACUCUGUUCCCAAAGACAUAUU-AAAUGGUAGCGCCUAAAAAC--------------------- .............((((((((((....))).........(((---...))))))......(((.(((..........-...))).)))))))......--------------------- ( -16.62, z-score = -0.87, R) >consensus UAAAUACAACAAGAGGCGACGUCGCAAGAUUUUCCAGCAGAC___CACGUCGUCCACUCUGUUCCCAAAGACAUAUUUAAAUGGUAGCGCCUAAAGAC_____________________ .............(((((..(((....)))..................(((..................)))...............)))))........................... (-11.37 = -11.59 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:51:32 2011