Locus 2453

Sequence ID dm3.chr2L
Location 19,200,162 – 19,200,255
Length 93
Max. P 0.513196
window3376

overview

Window 6

Location 19,200,162 – 19,200,255
Length 93
Sequences 5
Columns 93
Reading direction forward
Mean pairwise identity 92.19
Shannon entropy 0.12769
G+C content 0.52984
Mean single sequence MFE -27.62
Consensus MFE -21.44
Energy contribution -21.84
Covariance contribution 0.40
Combinations/Pair 1.09
Mean z-score -1.89
Structure conservation index 0.78
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.04
SVM RNA-class probability 0.513196
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 19200162 93 + 23011544
GCUUGUCCCUGUCUGGUGGUCUGGUGGUGGUCGGUCCACCGCCCUCGCUUUAUGACUUACCAUAAAUUUUAUGACAGCGCCUAGACACCGAUA
...((((..((((((((((((.((((((((.....)))))))).....((((((......))))))......)))..)))).)))))..)))) ( -32.70, z-score =  -2.79, R)
>droSim1.chr2L 18890102 93 + 22036055
GCUUGUCCCUGCCUGGUGGUCUGGUGGUGGUCGGUCCACCGCCCUCGCUUUAUGACUUACCAUAAAUUUUAUGACAGCGCCUAGACACCGAUA
...((((...(((((((((...((((((((.....)))))))).))))((((((......))))))........))).))...))))...... ( -29.00, z-score =  -1.49, R)
>droSec1.super_7 2823490 93 + 3727775
GCUUGUCCCUGCCUGGUGGUCUGGUGGUGGUCGGUCCACCGCCCUCGCUUUAUGACUUACCAUAAAUUUUAUGACAGCGCCUAGACACCGAUA
...((((...(((((((((...((((((((.....)))))))).))))((((((......))))))........))).))...))))...... ( -29.00, z-score =  -1.49, R)
>droYak2.chr2R 5707612 85 + 21139217
GCUUGUCCCUGCCUC--------GUGGUGGUCGGUCCACCGCCCUCGCUUUAUGACUUACCAUAAAUUUUAUGACAGCGCCUAGACACCGAUA
(((.(((...((...--------(((((((.....)))))))....))((((((......))))))......))))))............... ( -21.50, z-score =  -1.52, R)
>droEre2.scaffold_4845 17508491 85 - 22589142
GCUUGUCCCUGUCUC--------GUGGUGGUCGGUCCACCGCCCUCGCUUUAUGACUUACCAUAAAUUUUAUGACAGUGCCUAGACGGCGAUA
...((((.(((((..--------(((((((.....)))))))......((((((......))))))......))))).(((.....))))))) ( -25.90, z-score =  -2.15, R)
>consensus
GCUUGUCCCUGCCUGGUGGUCUGGUGGUGGUCGGUCCACCGCCCUCGCUUUAUGACUUACCAUAAAUUUUAUGACAGCGCCUAGACACCGAUA
...((((...(((((.......((((((((.....)))))))).....((((((......))))))........))).))...))))...... (-21.44 = -21.84 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:51:31 2011