| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,157,900 – 19,157,996 |
| Length | 96 |
| Max. P | 0.867896 |
| Location | 19,157,900 – 19,157,996 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 78.73 |
| Shannon entropy | 0.37194 |
| G+C content | 0.44915 |
| Mean single sequence MFE | -30.05 |
| Consensus MFE | -19.79 |
| Energy contribution | -19.26 |
| Covariance contribution | -0.53 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.867896 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 19157900 96 - 23011544 ACCGCGCCACUGGUCGUGGGGUAACUUG--UACUAU--CUAGCCA-UUUUUUGG------GGGCUAAGCCCCAUGCAUAGAACCAGUG--------CAGUGAGUCAAAAGAUUAU ..(((..(((((((((((((((.....(--......--)(((((.-........------.))))).))))))))......)))))))--------..)))((((....)))).. ( -30.10, z-score = -0.92, R) >droSec1.super_7 2780374 96 - 3727775 -ACCGCGCACUGGUCGUGGGGUAACUUG--UACUAU--CUGGCGAUUUUUUUGG------AGACUAAGCCCCAUGCAUAGAACCAGUG--------CAGUGAGUCAAAAGAUUAU -..(((((((((((((((((((...(((--(.....--...)))).......(.------...)...))))))))......)))))))--------).)))((((....)))).. ( -31.90, z-score = -2.41, R) >droSim1.chr2L 18847588 95 - 22036055 -ACCGCGCACUGGUCGUGGGGUAACUUG--UACUAU--CUGGCGA-UUUUUUGG------GGGCUAAGCCCCAUGCAUAGAACCAGUG--------CAGUGAGUCAAAAGAUUAU -..((((((((((((((.(((((.....--...)))--)).))))-.......(------((((...)))))..........))))))--------).)))((((....)))).. ( -35.00, z-score = -2.47, R) >droYak2.chr2R 5665557 93 - 21139217 --CGCCACACUGGUCGUGGGGUAACUUG--UACUAU--CUGCCGA-UUUUUUGU-------GGCUAAGCCCCAUGCAUAGAACCAGUG--------CAUUAAGUCAAAAGAUUAU --.....(((((((((((((((.....(--......--).((((.-.......)-------)))...))))))))......)))))))--------.....((((....)))).. ( -25.30, z-score = -1.06, R) >droEre2.scaffold_4845 17466777 94 + 22589142 --CACCACACUGGUCGUGGGGCAACUUG--UACUAU--CUGUCGAGUUUUUUGG-------GGCUCAGCCCCAUGCAUAGAACCAGUG--------CAGUGAGUCAAAAGAUUAU --(((..(((((((((((((((.....(--.((...--..)))((((((....)-------))))).))))))))......)))))))--------..)))((((....)))).. ( -33.80, z-score = -2.62, R) >droAna3.scaffold_12916 10903774 113 + 16180835 --AAUAACAUUAGUCGUGGGGUUAUCUAUUUAUUAUUCUUGUUUUUUUUUUUGUAUUAUUUGGAAAAACCCCAUGCAUAGAACGGAUGGUUCCAUCGAAUGAGUCAAAAGAUUAU --.....((((.(.(((((((((.((((..((.(((................))).))..))))..))))))))))........((((....)))).))))((((....)))).. ( -24.19, z-score = -1.30, R) >consensus __CACCACACUGGUCGUGGGGUAACUUG__UACUAU__CUGGCGA_UUUUUUGG_______GGCUAAGCCCCAUGCAUAGAACCAGUG________CAGUGAGUCAAAAGAUUAU .......(((((((((((((((.............................................))))))))......))))))).............((((....)))).. (-19.79 = -19.26 + -0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:51:28 2011