| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,157,325 – 19,157,419 |
| Length | 94 |
| Max. P | 0.542298 |
| Location | 19,157,325 – 19,157,419 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 65.89 |
| Shannon entropy | 0.60573 |
| G+C content | 0.37065 |
| Mean single sequence MFE | -18.28 |
| Consensus MFE | -7.08 |
| Energy contribution | -7.75 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.542298 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2L 19157325 94 + 23011544 --------CUGAACUUGCUUAUACACAGGUUUAGACAUCUAC-UAUUUACCACAAAGCCAAUGAUUUCUGGUCUUGAUCAUUGGGUCUUUCGUUCUCUGUACG--------- --------(((((((((........))))))))).....(((-.....((.....(.(((((((((.........))))))))).).....)).....)))..--------- ( -19.40, z-score = -1.56, R) >droEre2.scaffold_4845 17466156 80 - 22589142 --------CUGAACUUGCUUAUACACAGGUUUAGACAUCUAUGUAUUUACCACAUAGCCAACGAUUUCUGGUCUU--UCGUU--CUCUGUUG-------------------- --------(((((((((........)))))))))....((((((.......))))))..(((((...........--)))))--........-------------------- ( -14.90, z-score = -1.42, R) >droYak2.chr2R 5665071 91 + 21139217 --------CUGAACUUGCUUAUACACAUGUUUAGACAUCU----AUUUACCACAUAGCCAACAAUUUCUGGUUUUGAACAUUGGUUCUUUCGUUCUCUGUAGC--------- --------((((((.((........)).))))))....((----((.....((..(((((........)))))..((((....))))....)).....)))).--------- ( -12.50, z-score = 0.18, R) >droSim1.chr2L 18846975 94 + 22036055 --------CUGAACUUGCUUAUACACAGGUUUAGACAUCUAC-UAUUUACCACAUAGCCAACGAUUUCUGGUCUUGAUCAUUGGUUCUUUCGUUCUCUGUAGG--------- --------(((((((((........)))))))))....((((-.....((.....((((((.((((.........)))).)))))).....)).....)))).--------- ( -20.60, z-score = -1.99, R) >droSec1.super_7 2779783 94 + 3727775 --------CUGAACUUGCUUAUACACAGGUUUAGACAUCUAC-UAUUUACCACAUAGCCAACGAUUUCUGGUCUUGAUCAUUGGUUUUUUCGUUCUCUGUAGG--------- --------(((((((((........)))))))))....((((-.....((.....((((((.((((.........)))).)))))).....)).....)))).--------- ( -21.30, z-score = -2.42, R) >droWil1.scaffold_180703 391849 112 + 3946847 UUAGGCUUCUUGUUUUUAUAGCUUAUAACCAUAAAAAGUUAUUGUUGUACCAUUAAUUUAUAUGUAUAUAUGUUUUGUGAGAAUGCCUGUGUGUGUGUGUGAGUGUUGGAUG ................((((((..(((((........))))).))))))(((...(((((((..(((((((((((.....))))....)))))))..)))))))..)))... ( -21.00, z-score = -0.89, R) >consensus ________CUGAACUUGCUUAUACACAGGUUUAGACAUCUAC_UAUUUACCACAUAGCCAACGAUUUCUGGUCUUGAUCAUUGGUUCUUUCGUUCUCUGUAGG_________ ........(((((((((........)))))))))......................((((........))))........................................ ( -7.08 = -7.75 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:51:27 2011