| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,140,228 – 19,140,339 |
| Length | 111 |
| Max. P | 0.561486 |
| Location | 19,140,228 – 19,140,339 |
|---|---|
| Length | 111 |
| Sequences | 4 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 91.63 |
| Shannon entropy | 0.13375 |
| G+C content | 0.37099 |
| Mean single sequence MFE | -23.22 |
| Consensus MFE | -21.17 |
| Energy contribution | -21.04 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.561486 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 19140228 111 + 23011544 -GGAGAAUUUCGUCUCCUUCAAGCUCCAUUUGUGUGAUUUUCUUGGAACAUAAACAGCAGCAUGUGUUUCUUUGUUUAAUGUGCUUUUGUUGGAUCUUCUGCUGUUGUAUUC -(((((......)))))...(((.((((.((((((..(......)..))))))((((.(((((((.............))))))).)))))))).))).(((....)))... ( -22.52, z-score = -0.49, R) >droEre2.scaffold_4845 17456209 111 - 22589142 -GGAGAAUUUCGUCUCCUUCAAGCUCCAUUUGUGUGAUUUUCUCGGAACAUAAGCAGCAGCAUGUGUUUCUUUGUUUAAUGUGCUUUUGUUGGUUCUUUUGCUGUUGUAUUC -(((((......)))))..............(((..((......(((((...(((((.(((((((.............))))))).))))).)))))......))..))).. ( -24.22, z-score = -1.05, R) >droYak2.chr2R 5655290 103 + 21139217 AGUAGAAUUUCGUCUCCUUCAAGCUCCAUUUGUGUGAUUUUCUUGGAAUAUAAGCAGCAGCAUGUGUUUCUUUGUUUAAUAUGCUUUUGUUUGUUCUUUUGCU--------- ((((((((((((......(((.((.......)).)))......))))))((((((((.(((((((.............))))))).))))))))...))))))--------- ( -21.22, z-score = -1.68, R) >droSim1.chr2L 18837150 111 + 22036055 -GGAGAAUUUCGUCUCCUUCAAGCUCCAUUUGUGUGAUUUUCUUGGAACAUAAACAGCAGCAUGUGUUUCUUUGUUUAAUGUGCUUUUGUUGGUUCUUCUGCUGUUGUAUUC -(((((......)))))..............(((..((......(((((...(((((.(((((((.............))))))).))))).)))))......))..))).. ( -24.92, z-score = -1.61, R) >consensus _GGAGAAUUUCGUCUCCUUCAAGCUCCAUUUGUGUGAUUUUCUUGGAACAUAAACAGCAGCAUGUGUUUCUUUGUUUAAUGUGCUUUUGUUGGUUCUUCUGCUGUUGUAUUC .(((((......)))))....(((..(((....)))........(((((...(((((.(((((((.............))))))).))))).)))))...)))......... (-21.17 = -21.04 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:51:24 2011