| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,135,467 – 19,135,550 |
| Length | 83 |
| Max. P | 0.593436 |
| Location | 19,135,467 – 19,135,550 |
|---|---|
| Length | 83 |
| Sequences | 6 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 78.67 |
| Shannon entropy | 0.38522 |
| G+C content | 0.30850 |
| Mean single sequence MFE | -11.22 |
| Consensus MFE | -5.98 |
| Energy contribution | -6.51 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.593436 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 19135467 83 - 23011544 UAUGCAGUUCCUUUGUUGUAACCACUACAAAGCCAAA-AU--AAUUGCAAACUCA----AAAGAAACCCAUAAAAGCAAGAAUAGAGUUA ..(((((((..(((((((((.....)))))...))))-..--)))))))(((((.----.........................))))). ( -12.47, z-score = -2.03, R) >droSim1.chr2L 18831841 83 - 22036055 UAUGCAGUUCCUUUGUUGUAACCACCACAAAGCCGAA-AU--AAUUGCAAACUCA----AAAGAAACCCAUAAAAGCAAGAAUAGAGUUA ..((((((((((((((.((....)).))))))..)).-..--.))))))(((((.----.........................))))). ( -11.27, z-score = -1.78, R) >droSec1.super_7 2764279 83 - 3727775 UAUGCAGUUCCUUUGUUGUAACCACCACAAAGCCGAA-AU--AAUUGCAAACUCA----AAAGAAACCCAUAAAAGCAAGAAUAGAGUUA ..((((((((((((((.((....)).))))))..)).-..--.))))))(((((.----.........................))))). ( -11.27, z-score = -1.78, R) >droYak2.chr2R 5650468 78 - 21139217 UAUGCAGUUUCUUUGUUGUAACCACUACAAAGCCAAA-AU--AAUUGCAAACUCA----AAAGAAAACCAUAAGA-----AAUAGAGUUA ..(((((((..(((((((((.....)))))...))))-..--)))))))(((((.----................-----....))))). ( -13.20, z-score = -2.37, R) >droEre2.scaffold_4845 17451314 78 + 22589142 UAUGCAAUUUCUUUGUUGUAACCACUACAAAGCCAAC-AU--AAUUGCAAACUCA----AAAGAAAACCAUAAAA-----AAUAGAGUUA ..(((((((.((((((.((....)).)))))).....-..--)))))))(((((.----................-----....))))). ( -12.10, z-score = -2.50, R) >droWil1.scaffold_180703 372874 88 - 3946847 UACAAGGUGUCUCUGUUAUCAAAAAUGUAAAGCAAAACAUCAAAUAUCAGAUGCAAUUCAAAUAAAUCAACAAAAACAAUGAAAAAAU-- .......(((.((((.(((.....((((........))))...))).)))).))).................................-- ( -7.00, z-score = -0.42, R) >consensus UAUGCAGUUCCUUUGUUGUAACCACUACAAAGCCAAA_AU__AAUUGCAAACUCA____AAAGAAACCCAUAAAAGCAAGAAUAGAGUUA ..(((((((.((((((.((....)).))))))..........)))))))(((((..............................))))). ( -5.98 = -6.51 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:51:23 2011