| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,089,401 – 19,089,492 |
| Length | 91 |
| Max. P | 0.708580 |
| Location | 19,089,401 – 19,089,492 |
|---|---|
| Length | 91 |
| Sequences | 11 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 82.28 |
| Shannon entropy | 0.35532 |
| G+C content | 0.42231 |
| Mean single sequence MFE | -27.01 |
| Consensus MFE | -13.99 |
| Energy contribution | -13.85 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.708580 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 19089401 91 + 23011544 ---------GAGUCAGUCUGGUGACAGCAAGUGCAAUAAUUUGUUUGCAGUUUUCCCCGUUAAGUGCUCUAUUUUGUACAAAUGGAAACAUCACCAGGCA----------- ---------......(((((((((..((((..((((....)))))))).((((...(((((..((((........)))).))))))))).))))))))).----------- ( -29.40, z-score = -3.35, R) >droSim1.chr2L 18783205 91 + 22036055 ---------GAGUCAGUCUGGUGACAGCAAGUGCAAUAAUUUGUUUGCAGUUUUCCCCGUUAAGUGCUCUAUUUUGUACAAAUGGAAACAUCACCAGGCA----------- ---------......(((((((((..((((..((((....)))))))).((((...(((((..((((........)))).))))))))).))))))))).----------- ( -29.40, z-score = -3.35, R) >droSec1.super_7 2719042 91 + 3727775 ---------GAGUCAGUCUGGUGACAGCAAGUGCAAUAAUUUGUUUGCAGUUUUCCCCGUUAAGUGCUCUAUUUUGUACAAAUGGAAACAUCACCAGGCA----------- ---------......(((((((((..((((..((((....)))))))).((((...(((((..((((........)))).))))))))).))))))))).----------- ( -29.40, z-score = -3.35, R) >droYak2.chr2R 5605199 91 + 21139217 ---------AAGUCAGUCUGGUGACAGCAAGUGCAAUAAUUUGUUUGCAGUUUUCCCCGUUAAGUGCUCUAUUUUGUACAAAUGGAAACAUCACCAGGCA----------- ---------......(((((((((..((((..((((....)))))))).((((...(((((..((((........)))).))))))))).))))))))).----------- ( -29.40, z-score = -3.60, R) >droEre2.scaffold_4845 17406539 91 - 22589142 ---------AAGUCAGUCUGGUGACAGCAAGUGCAAUAAUUUGUUUGCAGUUUUCCCCGUUAAGUGCUCUAUUUUGUACAAAUGGAAACAUCACCAGGCA----------- ---------......(((((((((..((((..((((....)))))))).((((...(((((..((((........)))).))))))))).))))))))).----------- ( -29.40, z-score = -3.60, R) >droAna3.scaffold_12916 10842595 103 - 16180835 AUACAGUCGGAGUCAGUCCGGUGACAGCAAGUGCAAUAAUUUGUUUGCAGUUUUCCCCGUUAAGUGCUCUAUUUUGUACAAAUGGAAACAUCAGAAGCUUCCA-------- ........(((((...((.((((...((((..((((....))))))))........(((((..((((........)))).)))))...)))).)).)))))..-------- ( -22.30, z-score = -0.61, R) >droPer1.super_16 471427 104 + 1990440 UCGCUCUCGCACAGACUCUGGUGACAACAAGUGCAAUAAUUUGUUUGCAGUUUUCCCCGUUAAGUGCUCUAUUUUGCACAAAUGGAAACAUCACUAGCAGCGCA------- ..((....))...(.(((((((((.......(((((........)))))((((...(((((..((((........)))).))))))))).))))))).)))...------- ( -25.60, z-score = -0.82, R) >droWil1.scaffold_180772 7048424 81 + 8906247 ------------------UGGUGACAGCAAGUGCAAUAAUUUGUUUGCAGUUUCCCC-GUUAAGUGCUCUAUUUUGUACAAAUGGAAACAUCACCAGCAA----------- ------------------((((((..((((..((((....)))))))).((((((..-.....((((........))))....)))))).))))))....----------- ( -23.20, z-score = -2.51, R) >droVir3.scaffold_12723 3041083 98 + 5802038 ---------GACUCGCUCUGGUGACAGCAAGUGCAAUAAUUUGUUUGCAGUUUCCCC-GUUAAGUGCUCUAUUUUGUACAAAUGGAAACAUCAGAGCCA--GCGCUGGCA- ---------.....(((((((((...((((..((((....)))))))).......((-(((..((((........)))).)))))...)))))))))..--((....)).- ( -29.30, z-score = -1.39, R) >droMoj3.scaffold_6500 25527247 102 - 32352404 ---------GACUCGCUUUGGUGACAGCAAGUGCAAUAAUUUGUUUGCAGUUUCCCCCGUUAAGUGCUCUAUUUUGUACAAAUGGAAACAUCACAGUCAGAGAGCCAGCCA ---------(.((.(((((..((((.((((..((((....)))))))).((((((...(((..((((........)))).)))))))))......)))).))))).)).). ( -24.60, z-score = -0.78, R) >droGri2.scaffold_15126 7958084 99 - 8399593 ---------GACUCGCUUUGGUGACAGCAAGUGCAAUAAUUUGUUUGCAGUUUCAAC-GUUAAGUGCUCUAUUUUGUACAAAUGGAAACAUCAGAGGCAAAGCGCUGCC-- ---------...((((....))))((((...(((((........)))))(((((...-.....((((........))))..(((....)))..))))).....))))..-- ( -25.10, z-score = -0.23, R) >consensus _________GAGUCAGUCUGGUGACAGCAAGUGCAAUAAUUUGUUUGCAGUUUUCCCCGUUAAGUGCUCUAUUUUGUACAAAUGGAAACAUCACCAGCAA___________ ...................((.(((.((((..((((....)))))))).))).))........((((........))))..(((....))).................... (-13.99 = -13.85 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:51:19 2011