| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,070,224 – 19,070,329 |
| Length | 105 |
| Max. P | 0.619699 |
| Location | 19,070,224 – 19,070,329 |
|---|---|
| Length | 105 |
| Sequences | 8 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 67.91 |
| Shannon entropy | 0.63019 |
| G+C content | 0.53012 |
| Mean single sequence MFE | -22.20 |
| Consensus MFE | -12.51 |
| Energy contribution | -12.41 |
| Covariance contribution | -0.09 |
| Combinations/Pair | 1.38 |
| Mean z-score | -0.51 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.619699 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 19070224 105 + 23011544 ACCAGCUGAUCCCAGUGGCUCAUAAAAACAGCUGACUCCAAUUAGCCACAUGGCACCGG--UACCGGCAUCCUCAUCGGCAUCUCG-----GACUCUUCUCUCCGCACGCAC---- ....((((((.(((((((((.((.................)).)))))).)))..(((.--...))).......))))))....((-----((........)))).......---- ( -25.03, z-score = -0.65, R) >droSim1.chr2L 18764179 110 + 22036055 ACCAGCUGAUCACAGUGGCUCAUAAAAACAGCUGACUCCAAUUAGCCACAUGGCACCGG--UACCGGCAUCCUCAUCGGCAUCUCGGACUGGACUCUUCUCUCCGCACGCAC---- ..((((((......(((...))).....))))))..........(((....))).((((--(.((((.((((.....)).)).)))))))))....................---- ( -25.50, z-score = -0.12, R) >droSec1.super_7 2699905 110 + 3727775 ACCAGCUGAUCACAGUGGCUCAUAAAAACAGCUGACUCCAAUUAGCCACAUGGCACCGG--UAUCGGCAUCCUCAUCGGCAUCUCGGACUGGACUCUUCUCUCCGCACGCAC---- ....((((((....((...........)).(((((..((.....(((....)))...))--..)))))......))))))....((((..(((...)))..)))).......---- ( -24.00, z-score = 0.32, R) >droYak2.chr2R 5586328 93 + 21139217 ACCAGCUGAUCCCAGUGGCUCAUAAAAACAGCUGACUCCAAUUAGCCACAUGGCACCGG--UACCGGCAAC------------UCG-----GACUCUCCUCUCCGCACGCAC---- ....((((...(((((((((.((.................)).)))))).)))..(((.--...)))....------------.((-----((........)))))).))..---- ( -19.43, z-score = 0.21, R) >droEre2.scaffold_4845 17388863 93 - 22589142 ACCAGCUGAUCCCAGUGGCUCAUAAAAACAGCUGACUCCAAUUAGCCACAUGGCACCGG--UACCGGCAUC------------UCG-----GACUCUUCUCUCCGCACGCAC---- ....((.(((.(((((((((.((.................)).)))))).)))..(((.--...))).)))------------.((-----((........))))...))..---- ( -19.63, z-score = 0.11, R) >droAna3.scaffold_12916 10825275 111 - 16180835 ACCAGCUGAUCCGAGAGGAUCAUAAAAACAGCUGACUCCAAUUAGCCACAUGGCACCGGGACACCGGCAACC-----GGCAACCGGCAUCCAAAGUUAAAACACAUACUAAGGUAG (((.((((((((....))))).........((((..........(((....))).((((....))))....)-----)))....)))......(((..........)))..))).. ( -32.00, z-score = -3.16, R) >droMoj3.scaffold_6500 15178136 97 + 32352404 GCCAGCUGAUUCGUAUGGCUCAUAAAAACAGCUGACUCCAAUUAACCACAUGGCAUUACGACUUUACGGGA---------ACCUACAUACACACGCACACACACGC---------- ((((((((.((..((((...))))..))))))))..(((......((....)).....((......)))))---------..............))..........---------- ( -15.30, z-score = -0.78, R) >droGri2.scaffold_15252 3998214 87 + 17193109 AGCAGCUGAUCUGCCUGG-UCAUUAAAACAGCUGACUCCAAUUAGGCAUAUGUUACCAG--CCUCACCAG-------GACACGCAGACAAAAAAUCC------------------- ......((.(((((.(((-(((..........))))(((....((((...........)--))).....)-------)))).)))))))........------------------- ( -16.70, z-score = -0.04, R) >consensus ACCAGCUGAUCCCAGUGGCUCAUAAAAACAGCUGACUCCAAUUAGCCACAUGGCACCGG__UACCGGCAUC______GGCAUCUCG_____GACUCUUCUCUCCGCACGCAC____ ..((((((....................))))))..........(((....))).((((....))))................................................. (-12.51 = -12.41 + -0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:51:15 2011