| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,053,485 – 19,053,592 |
| Length | 107 |
| Max. P | 0.718927 |
| Location | 19,053,485 – 19,053,592 |
|---|---|
| Length | 107 |
| Sequences | 13 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.64 |
| Shannon entropy | 0.35025 |
| G+C content | 0.56610 |
| Mean single sequence MFE | -28.98 |
| Consensus MFE | -16.23 |
| Energy contribution | -15.08 |
| Covariance contribution | -1.15 |
| Combinations/Pair | 1.50 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.718927 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 19053485 107 - 23011544 -------------CCAUCCUCAUCAUCCUCGGCCAUCUCCUUGGCCAGCUCAAGGUCCUGCUGCUCCCGCUCGCGUCUCUCCUCGGCGCUCUCCAAAUCCUUGCCGUAGGACUUUGGGGG -------------.............(((((((((......)))))....(((((((((((.((....))..(((((.......)))))................))))))))))))))) ( -38.60, z-score = -3.57, R) >droSim1.chr2L 18748017 107 - 22036055 -------------CCAUCCUCAUCAUCCUCGGCCAUCUCCUUGGCCAGCUCAAGGUCCUGCUGCUCCCGCUCGCGUCUCUCCUCGGCACUCUCCAAAUCCUUACCGUAGGACUUUGGGGG -------------.............(((((((((......)))))....(((((((((((.((........))(((.......)))..................))))))))))))))) ( -33.80, z-score = -3.04, R) >droSec1.super_7 2683331 107 - 3727775 -------------CCAUCCUCAUCAUCCUCGGCCAUCUCCUUGGCCAGCUCAAGGUCCUGCUGCUCCCGCUCGCGUCUCUCCUCGGCACUCUCCAAAUCCUUACCGUAGGAUUUUGGGGG -------------....(((((..(((((((((((......))))).(((..(((...(((.((....))..))).....))).)))..................).)))))..))))). ( -31.50, z-score = -2.27, R) >droEre2.scaffold_4845 17371887 107 + 22589142 -------------CCAUCCUCAUCAUCCUCGGCCAUCUCCUUGGCCAGCUCAAGGUCCUGCUGCUCCCGCUCCCGUCUCUCCUCGGCGCUUUCUAAAUCCUUGCCGUAGGACUUUGGAGG -------------.............(((((((((......)))))....(((((((((((.((....))..............((((.............))))))))))))))))))) ( -36.22, z-score = -3.83, R) >droYak2.chr2R 5569177 107 - 21139217 -------------CCAUCCUCAUCAUCCUCGGCCAUCUCCUUGGCCAGCUCAAGGUCCUGUUGCUCCCGCUCGCGUCUCUCCUCGGCGCUUUCCAAGUCCUUGCCGUAGGAUUUUGGAGG -------------.............(((((((((......)))))....((((((((((..((....(((.(((((.......)))))......)))....))..)))))))))))))) ( -35.40, z-score = -2.91, R) >droAna3.scaffold_12916 10807297 107 + 16180835 -------------CCGUCCUCAUCAUCCUCUGCCAUCUCCUUGGCCAGCUCAAGGUCCUGCUGUUCGCGCUCACGCCUCUCCUCGGCGCUUUCCAGAUCCUUUCCGUAAGACUUCGGGGG -------------....((((........((((((......))).)))....(((((.(((.....(((((.............)))))......((.....)).))).))))).)))). ( -22.62, z-score = 1.23, R) >dp4.chr4_group1 4523845 107 + 5278887 -------------CCAUCCUCAUCAUCUUCAGCCAUCUCUUUGGCCAACUCCAAGUCCUGCUGCUCACGCUCGCGUCUCUCCUCAGCACUCUCCAGAUCCUUUCCGUACGACUUGGGCGG -------------((................((((......))))....((((((((.(((((...(((....))).......))))).......((.....)).....)))))))).)) ( -22.20, z-score = -1.53, R) >droPer1.super_5 4455876 107 - 6813705 -------------CCAUCCUCAUCAUCUUCAGCCAUCUCUUUGGCCAACUCCAAGUCCUGCUGCUCUCGCUCGCGUCUCUCCUCAGCACUCUCCAGAUCCUUGCCGUACGACUUGGGCGG -------------((................((((......))))....((((((((.(((.((....(((.(.(......).))))..((....)).....)).))).)))))))).)) ( -22.90, z-score = -1.09, R) >droWil1.scaffold_180772 755264 107 + 8906247 -------------CCAUCUUCAUCAUCCUCCGCCAUCUCUUUGGCCAAUUCCAAAUCCUGUUGCUCACGCUCGCGUCUUUCUUCGGCGCUUUCGAGGUCCUUACCAUAUGACUUCGGAGG -------------.............(((((((((......))))...........................(((((.......)))))....((((((..........))))))))))) ( -26.60, z-score = -2.73, R) >droVir3.scaffold_12963 15134386 107 + 20206255 -------------CCAUCUUCAUCAUCUUCGGCCAUCUCCUUGGCCAACUCCAAAUCCUGCUGUUCGCGUUCGCGUCGUUCCUCGGCGCUCUCCAAGUCCUUGCCGUACGAUUUGGGAGG -------------.............(((((((((......)))))....(((((((.(((.((..((....((((((.....)))))).......))....)).))).))))))))))) ( -32.60, z-score = -3.20, R) >droMoj3.scaffold_6500 23395632 107 + 32352404 -------------CCGUCUUCAUCAUCUUCGGCCAUCUCUUUGGCCAGCUCCAGGUCCUGUUGUUCCCGCUCACGUCGCUCCUCGGCACUCUCCAAAUCCUUGCCAUAAGAUUUGGGGGG -------------.................(((((......)))))(((....((..(....)..)).)))...((((.....)))).(((((((((((..........))))))))))) ( -28.50, z-score = -1.16, R) >droGri2.scaffold_15252 429880 107 - 17193109 -------------CCAUCCUCAUCAUCUUCAGCCAUCUCCUUGGCCAGCUCCAAAUCCUGUUGCUCACGCUCGCGUCUCUCCUCGGCACUCUCCAAGUCCUUGCCAUAGGAUUUGGGUGG -------------((((..............((((......)))).....(((((((((((.((..(((....)))........((.(((.....)))))..)).))))))))))))))) ( -30.10, z-score = -3.21, R) >apiMel3.GroupUn 253152463 120 - 399230636 AAUUUAAGGAAAUCCAUCAUCAUCUUCUUCUGCCAUUUCUUUAGCAAGUUCUAAAUCUUGUUGUUCUCUUUCUCUACGUUCUUCAGCUGAUUCAAGAUCUUUGCCAUAUGAUUUUGGAGG ............((((..(((((..................(((((((........)))))))......................((.((((...))))...))...)))))..)))).. ( -15.70, z-score = 1.08, R) >consensus _____________CCAUCCUCAUCAUCCUCGGCCAUCUCCUUGGCCAGCUCAAGGUCCUGCUGCUCCCGCUCGCGUCUCUCCUCGGCACUCUCCAAAUCCUUGCCGUAGGACUUUGGAGG ..........................((((.((((......)))).....(((((((.(((.((........))((.........))..................))).))))))))))) (-16.23 = -15.08 + -1.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:51:14 2011