| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,030,167 – 19,030,260 |
| Length | 93 |
| Max. P | 0.713233 |
| Location | 19,030,167 – 19,030,260 |
|---|---|
| Length | 93 |
| Sequences | 8 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 76.67 |
| Shannon entropy | 0.46231 |
| G+C content | 0.61305 |
| Mean single sequence MFE | -32.40 |
| Consensus MFE | -18.19 |
| Energy contribution | -16.79 |
| Covariance contribution | -1.41 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.713233 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 19030167 93 + 23011544 GAACGCCAACGGUGCACCAAGAGAGACCUGCCUCGGUGGCAGCGUCUGUCAGUUCCGGCGUCUCGAUGUCGGAACUGAAGUCCAUGCCCGCCA .........(((.(((.......(((((((((.....))))).)))).(((((((((((((....)))))))))))))......))))))... ( -42.10, z-score = -3.22, R) >droSim1.chr2L 18724538 93 + 22036055 GAACGCCAACGGUGCACCAAGAGAGACCUGCCUCGGUGGCAGCGUCUGUCAGUUCCGGCGUCUCGAUGUCGGAACUGAAGUCCAUGCCCGCCA .........(((.(((.......(((((((((.....))))).)))).(((((((((((((....)))))))))))))......))))))... ( -42.10, z-score = -3.22, R) >droSec1.super_7 2660200 93 + 3727775 GAACGCCAACGAUGCACCAAGAGAGACCUGCCUCGGUGGCAGCGUCUGUCAGUUCCGGCGUCUCGAUGUCGGAACUGAAGUCCAUGCCCGCCA .........((..(((.......(((((((((.....))))).)))).(((((((((((((....)))))))))))))......))).))... ( -37.10, z-score = -2.27, R) >droYak2.chr2R 5545907 93 + 21139217 GAACGCCAACGGUUCACCAAGAGAGACCUGCCUCGGUGGCAGCCUCUGUCAGUUCCGGCGUCUCGAUUUCGGAACUAAAGUCCAUGCCCGCCA ((((.......)))).......(((......)))(((((((....((...((((((((.((....)).))))))))..))....)).))))). ( -28.00, z-score = -0.46, R) >droEre2.scaffold_4845 17348733 93 - 22589142 GAACGCCAACGGUGCACCAAGAGAGACCUGCCUCGGUGGCAGCGUCUGUCAGUUCCGGCGUCUCGAUCUCGGAACUUAAGUCCAUGCCCGCCA .........(((.(((....((.(((((((((.....))))).)))).))((((((((.((....)).))))))))........))))))... ( -35.50, z-score = -1.91, R) >droAna3.scaffold_12916 10783894 93 - 16180835 GCACCCCAUCCACCCAUUCCGAAAGACCCGCCUCGGUGGCAGCCUCGGUCAGCUCGGGAGUCUCUGUGUCCGAGCUUAAAUCCAUGCCUCCCA (((...............((((.....((((....)))).....))))..((((((((..........))))))))........)))...... ( -23.00, z-score = 0.19, R) >dp4.chr4_group3 11034282 74 - 11692001 -------------------AGAACGGCCCGCCUCAGUGGCCGCUUCGGUUAGCUCUGGAGUCUCCGUGUCGGAGCUUAAGUCGAUGCCUGCAA -------------------.(((((((((......).))))).)))(((.....((.(((.(((((...)))))))).)).....)))..... ( -25.70, z-score = -0.31, R) >droPer1.super_1 8149222 74 - 10282868 -------------------AGAACGGCCCGCCUCAGUGGCCGCUUCGGUUAGCUCUGGAGUCUCCGUGUCGGAGCUUAAGUCGAUGCCUGCAA -------------------.(((((((((......).))))).)))(((.....((.(((.(((((...)))))))).)).....)))..... ( -25.70, z-score = -0.31, R) >consensus GAACGCCAACGGUGCACCAAGAGAGACCUGCCUCGGUGGCAGCGUCUGUCAGUUCCGGCGUCUCGAUGUCGGAACUUAAGUCCAUGCCCGCCA ....................((.(((...(((.....)))....))).))((((((((..........))))))))................. (-18.19 = -16.79 + -1.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:51:11 2011