| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,016,688 – 19,016,783 |
| Length | 95 |
| Max. P | 0.536324 |
| Location | 19,016,688 – 19,016,783 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 95.26 |
| Shannon entropy | 0.07686 |
| G+C content | 0.52150 |
| Mean single sequence MFE | -19.10 |
| Consensus MFE | -17.25 |
| Energy contribution | -17.25 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.536324 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 19016688 95 - 23011544 ACCAUGGCAAUCGCAUUCGCACUAACACACACACUCGCUCGCUGACACUAACACAAUCGCACCACAGGAGCGGCAUUGCGGCUAAAAAGCCAUAC ......((((((((....))...............(((((.(((....................))))))))).)))))((((....)))).... ( -21.15, z-score = -1.70, R) >droYak2.chr2R 5534172 89 - 21139217 ACCAUGGCAAUCGCAUUCGCACUCACACACA------CUCGCUUACACCAACACAAUCGCACCACAGGAGCGGCAUUGCGGCUAAAAAGCCAUAC ......(((((.((....((...........------...))...............(((.((...)).))))))))))((((....)))).... ( -17.64, z-score = -1.41, R) >droSec1.super_7 2647306 95 - 3727775 ACCAUGGCAAUCGCAUUCGCACUAACACACACACUCGCUCGCUUACACUAACACAAUCGCACCACAGGAGCGGCAUUGCGGCUAAAAAGCCAUAC ......(((((.((....))................((.(((((.......................))))))))))))((((....)))).... ( -18.80, z-score = -1.26, R) >droSim1.chr2L 18710046 95 - 22036055 ACCAUGGCAAUCGCAUUCGCACUAACACACACACUCGCUCGCUUACACUAACACAAUCGCACCACAGGAGCGGCAUUGCGGCUAAAAAGCCAUAC ......(((((.((....))................((.(((((.......................))))))))))))((((....)))).... ( -18.80, z-score = -1.26, R) >consensus ACCAUGGCAAUCGCAUUCGCACUAACACACACACUCGCUCGCUUACACUAACACAAUCGCACCACAGGAGCGGCAUUGCGGCUAAAAAGCCAUAC ......(((((.((....((....................))...............(((.((...)).))))))))))((((....)))).... (-17.25 = -17.25 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:51:07 2011