| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,014,429 – 19,014,532 |
| Length | 103 |
| Max. P | 0.851223 |
| Location | 19,014,429 – 19,014,532 |
|---|---|
| Length | 103 |
| Sequences | 10 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 77.25 |
| Shannon entropy | 0.45760 |
| G+C content | 0.45266 |
| Mean single sequence MFE | -24.81 |
| Consensus MFE | -18.32 |
| Energy contribution | -17.92 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.851223 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 19014429 103 + 23011544 -UGGCGCACUUUU-GAAGUUUGAGCUAAGUGACAUGCUGUUUAUUGUCGA-GAGUGUUAAAAUGUGCGCCCUGUGUGUGUGUGAGCCUGCCUGUUUGCCAGCCUUA------ -.(((((((((((-((.......(((...(((((..........))))).-.))).)))))).))))))).......((.(..(((......)))..)))......------ ( -26.70, z-score = -0.87, R) >droSim1.chr2L 18707810 93 + 22036055 -UGGCGCACUUUU-GAAGUUUGAGCUAAGUGACAUGCUGUUUAUUGUCGA-GAGUGUUAAAAUGUGCGCCCUGUGUGUG----------CCUGUUUGCCAGCCUUA------ -((((((((((((-((....(((((..(((.....))))))))...))))-))))))......(..(((.....)))..----------)......))))......------ ( -26.30, z-score = -1.68, R) >droSec1.super_7 2645068 93 + 3727775 -UGGCGCACUUUU-GAAGUUUGAGCUAAGUGACAUGCUGUUUAUUGUCGA-GAGUGUUAAAAUGUGCGCCCUGUGUGUG----------CCUGUUUGCCAGCCUUA------ -((((((((((((-((....(((((..(((.....))))))))...))))-))))))......(..(((.....)))..----------)......))))......------ ( -26.30, z-score = -1.68, R) >droYak2.chr2R 5532009 101 + 21139217 -UGGCGCACUUUU-GAAGUUUGAGCUAAGUGACAUGCUGUUUAUUGUCGA-GAGUGUUAAAAUGUGCGCCCUGUGUGUGUG--AGCCUGCCUGUUUCCCAGCUUUA------ -.(((((((((((-((....(((((..(((.....))))))))...))))-))))))....(((..(((...)))..))).--.))).((.((.....))))....------ ( -24.20, z-score = -0.51, R) >droEre2.scaffold_4845 17333964 101 - 22589142 -UGGCGCACUUUU-GAAGUUUGAGCUAAGUGACAUGCUGUUUAUUGUCGA-GAGUGUUAAAAUGUGCGCCCUGUGUGUGUG--AGCCCGCCUCUUUUCCAGCCUUA------ -.(((((((((((-((.......(((...(((((..........))))).-.))).)))))).)))))))(((.(.....(--((.....)))....)))).....------ ( -24.70, z-score = -0.76, R) >droAna3.scaffold_12916 10768921 101 - 16180835 -UGGCGCACUUUU-GAAGUUUGAGCUAAGUGACAUGCUGUUUAUUGUCGA-GAGUGUUAAAAUGUGCGCCCUGAAUCCUCCACAGUGUGAGUGUUUGCC---UUUGG----- -.(((((((((((-((....(((((..(((.....))))))))...))))-))))))..(((((..(((.(((.........))).)))..))))))))---.....----- ( -25.90, z-score = -0.94, R) >dp4.chr4_group3 11019583 80 - 11692001 -UGGCGCACUUUU-GAAGUUUGAGCUAAGUGACAUGCUGUUUAUUGUUGA-GAGUGUUAAAAUGUGCGCCCUGAAUCUACACG----------------------------- -.(((((((((((-(((.(((.(((.....(((.....)))....))).)-)).).)))))).))))))).............----------------------------- ( -21.30, z-score = -1.63, R) >droPer1.super_1 8134485 80 - 10282868 -UGGCGCACUUUU-GAAGUUUGAGCUAAGUGACAUGCUGUUUAUUGUUGA-GAGUGUUAAAAUGUGCGCCCUGAAUCUACA------CG----------------------- -.(((((((((((-(((.(((.(((.....(((.....)))....))).)-)).).)))))).)))))))...........------..----------------------- ( -21.30, z-score = -1.63, R) >droWil1.scaffold_180772 7889603 93 + 8906247 GUGGCGCACUUUUUGAAGUUUGAGCUAAGUGACAUGCUGUUUAUUGUUGA-GAGUGUUAAAAUGUGCGCCCUGAAUCUACA------CGCCUGUGUGUGA------------ ..(((((((.(((((((.(((.(((.....(((.....)))....))).)-)).).)))))).))))))).......((((------((....)))))).------------ ( -27.10, z-score = -2.21, R) >droMoj3.scaffold_6500 8981886 107 + 32352404 -CACCGCACUUUU-GAAGUUUGAGCUAAGUGACAUGCUGUUUAUUGUUGAAGGGUGUUAGAAU-UGCGCUCGGCGCGUACAU--ACCAGUUGAUUUGUGGAGCGAGAAAUUA -....((((((((-.((...(((((..(((.....))))))))...)).))))))))...(((-(.(((((.(((.((.((.--......)))).))).)))))...)))). ( -24.30, z-score = 0.80, R) >consensus _UGGCGCACUUUU_GAAGUUUGAGCUAAGUGACAUGCUGUUUAUUGUCGA_GAGUGUUAAAAUGUGCGCCCUGUGUGUGCA_______GCCUGUUUGCCAGCCUUA______ ..(((((((.........((((((((...(((((..........)))))...))).)))))..))))))).......................................... (-18.32 = -17.92 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:51:06 2011