| Sequence ID | dm3.chr2L |
|---|---|
| Location | 19,009,424 – 19,009,489 |
| Length | 65 |
| Max. P | 0.610845 |
| Location | 19,009,424 – 19,009,489 |
|---|---|
| Length | 65 |
| Sequences | 3 |
| Columns | 66 |
| Reading direction | reverse |
| Mean pairwise identity | 85.35 |
| Shannon entropy | 0.20489 |
| G+C content | 0.43147 |
| Mean single sequence MFE | -12.32 |
| Consensus MFE | -9.59 |
| Energy contribution | -9.37 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.610845 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 19009424 65 - 23011544 -AUUCACGCACGCAUACAAUCUUCAAGAAGGUUGGCAACUACAAAUAUUCGAAGUCGAAAACGGCG -.....(((.((....(((((((....))))))).............((((....))))..))))) ( -13.60, z-score = -2.27, R) >droEre2.scaffold_4845 17328868 66 + 22589142 AUUUCACGCCCACCCAUAAUCUUCAAGAAGGUUGGCAGCUUCAAAUAUUCGAAGUCGAAAACCGCC .((((..(((.(((...............))).))).(((((........))))).))))...... ( -13.06, z-score = -1.81, R) >droYak2.chr2R 5527109 66 - 21139217 AUUUUACGCCCACACAUAAUCUUCAAGAAGGUUGGCAUCUUCAAAUAUUCGAGUUCGAAAACCGCG ......(((.................((((((....)))))).....((((....))))....))) ( -10.30, z-score = -1.01, R) >consensus AUUUCACGCCCACACAUAAUCUUCAAGAAGGUUGGCAACUUCAAAUAUUCGAAGUCGAAAACCGCG .......((.......(((((((....))))))).............((((....))))....)). ( -9.59 = -9.37 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:51:05 2011