| Sequence ID | dm3.chr2L |
|---|---|
| Location | 18,948,023 – 18,948,084 |
| Length | 61 |
| Max. P | 0.839389 |
| Location | 18,948,023 – 18,948,084 |
|---|---|
| Length | 61 |
| Sequences | 6 |
| Columns | 62 |
| Reading direction | forward |
| Mean pairwise identity | 72.85 |
| Shannon entropy | 0.51701 |
| G+C content | 0.48819 |
| Mean single sequence MFE | -13.52 |
| Consensus MFE | -8.38 |
| Energy contribution | -8.55 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.839389 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 18948023 61 + 23011544 UUAUGCCCAUUCCCCAUUCCUUGGGCC-ACCGUUCCUCGGAAUGGCUAAAAUUAACUCGCCA ....(((((............))))).-.((((((....))))))................. ( -14.90, z-score = -1.67, R) >droSim1.chr2L 18640688 61 + 22036055 UUAUGCCCAUUCCCCAUUCCUUGGGCC-AUCGUUCCUCGGAAUGGCUAAAAUUAACUCGCCA ....(((((............))))).-...((((....))))(((............))). ( -12.90, z-score = -0.85, R) >droSec1.super_7 2577193 62 + 3727775 UUAUGCCCAUUCCCCAUUCCUUGGGCCCAUCGUUGCUCGGAAUGGCUAAAAUUAACUCGCCA .............(((((((..((((........)))))))))))................. ( -13.20, z-score = -0.41, R) >droYak2.chr2R 5465137 53 + 21139217 -------UUAUGCCCAUUCCUUGGUCC-AUCGUUCCUCGGAAUGGCUAAAAUUAGCUUGCA- -------...(((.((((((..((...-......))..))))))((((....))))..)))- ( -13.50, z-score = -1.92, R) >droEre2.scaffold_4845 17260813 60 - 22589142 UUAUGCCCAUUCCCCAUUCCUUGGUCC-AUCGUUCCUCGGAAUGGCUAAAAUUAACUUGCA- .............(((((((..((...-......))..)))))))................- ( -11.70, z-score = -1.51, R) >droMoj3.scaffold_6500 24420251 57 + 32352404 GGGUCGCCAAGCCCUUUGCUCUGCUCU--UCUCUGCGCGGGAUGAGCUACAUUUAUUUA--- ((((......))))........((((.--((((.....)))).))))............--- ( -14.90, z-score = -0.47, R) >consensus UUAUGCCCAUUCCCCAUUCCUUGGGCC_AUCGUUCCUCGGAAUGGCUAAAAUUAACUCGCC_ .............(((((((..((..........))..)))))))................. ( -8.38 = -8.55 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:51:03 2011