| Sequence ID | dm3.chr2L |
|---|---|
| Location | 18,943,271 – 18,943,341 |
| Length | 70 |
| Max. P | 0.826030 |
| Location | 18,943,271 – 18,943,341 |
|---|---|
| Length | 70 |
| Sequences | 3 |
| Columns | 70 |
| Reading direction | forward |
| Mean pairwise identity | 92.38 |
| Shannon entropy | 0.10495 |
| G+C content | 0.54420 |
| Mean single sequence MFE | -9.50 |
| Consensus MFE | -9.50 |
| Energy contribution | -9.50 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.09 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.826030 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 18943271 70 + 23011544 CUUACAGUCACCGUUUAAAAGAACGCCUCCGCUUCCAACAGCUGGUCCAUCGCCACCUGAUCCUCCUCCA ...........(((((....))))).............(((.((((.....)))).)))........... ( -9.50, z-score = -0.91, R) >droSec1.super_7 2571709 64 + 3727775 ------CUUACCGUUUAAAAGAACGCCUCCGCUUCCAACAGCUGGUCCAUCGCCACCUGAUCCUCCUCCA ------.....(((((....))))).............(((.((((.....)))).)))........... ( -9.50, z-score = -1.45, R) >droSim1.chr2L 18635185 70 + 22036055 CUUACAGUCACCGUUUAAAAGAACGCCUCCGCUUCCAACAGCUGGUCCAUCGCCACCUGAUCCUCCUCCA ...........(((((....))))).............(((.((((.....)))).)))........... ( -9.50, z-score = -0.91, R) >consensus CUUACAGUCACCGUUUAAAAGAACGCCUCCGCUUCCAACAGCUGGUCCAUCGCCACCUGAUCCUCCUCCA ...........(((((....))))).............(((.((((.....)))).)))........... ( -9.50 = -9.50 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:51:02 2011