| Sequence ID | dm3.chr2L |
|---|---|
| Location | 18,912,031 – 18,912,134 |
| Length | 103 |
| Max. P | 0.915518 |
| Location | 18,912,031 – 18,912,134 |
|---|---|
| Length | 103 |
| Sequences | 7 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 74.94 |
| Shannon entropy | 0.44447 |
| G+C content | 0.38801 |
| Mean single sequence MFE | -21.30 |
| Consensus MFE | -12.59 |
| Energy contribution | -14.63 |
| Covariance contribution | 2.04 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.24 |
| SVM RNA-class probability | 0.915518 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 18912031 103 - 23011544 UUUUUGUUUUUUUUUUCGAGUGCAGCAGGGAGAUAAAUUAAAACCAUGUAAGUGGUUAAUUAAACGCGUUUUACCCGCACUCGCGCCUGCCUCAUAUCGCAUA--- .................(((.((((..(.(((.........((((((....))))))........(((.......))).))).)..)))))))..........--- ( -24.20, z-score = -1.19, R) >droSim1.chr2L 18603500 96 - 22036055 --------AUUUUUUUCGAGUGCAGCAGGGAGAUAAAUUAAAACCAUGUAAGUGGUUAAUUAAACGCGUUUUACCCGCAUUC--GCCUGCCUCAUAUCAUCGCAUA --------.........(((((..((((((((.........((((((....))))))........(((.......))).)))--.)))))..))).))........ ( -21.50, z-score = -1.23, R) >droSec1.super_7 2540692 96 - 3727775 --------AUUUUUUUCGAGUGCAGCAGGGAGAUAAAUUAAAACCAUGUAAGUGGUUAAUUAAACGCGUUUUACCCGCACUC--GCCUGCCUCAUAUCAUCGUAUA --------.........(((((..((((((((.........((((((....))))))........(((.......))).)))--.)))))..))).))........ ( -24.00, z-score = -2.20, R) >droYak2.chr2R 5428551 91 - 21139217 -----UUAUAUUUUUUCGAGUGCAGCAGGGAGAUAAAUUAAAACCAUGUAAGUGGUUAAUUAAACGCGUUUUACCCGCACUC--GCCUGCCUCAUAUC-------- -----............(((....((((((((.........((((((....))))))........(((.......))).)))--.)))))))).....-------- ( -23.30, z-score = -2.46, R) >droEre2.scaffold_4845 17223667 89 + 22589142 -------AUUUUUUUUCGAGUGCAGCAGGGAGAUAAAUUAAAACCAUGUAAGUGGUUAAUUAAACGCGUUUUACCCGCACUC--GACUGCCUCAUAUC-------- -------..........(((.((((..(((...........((((((....))))))........(((.......))).)))--..))))))).....-------- ( -23.10, z-score = -2.59, R) >dp4.chr4_group3 2272752 80 - 11692001 ----UUUGUGGAAUUUCCUGCGAGAGAAAAGGAUAAAUUAAAACCAUGUAAGUGGUUAAUUAAACGCGUUUUACCCGCACUCAC---------------------- ----..(((((....((((.(....)...))))........((((((....)))))).................))))).....---------------------- ( -17.40, z-score = -1.57, R) >droPer1.super_1 3744929 80 - 10282868 ----UUUGUGGAAUUUCCUGCGAGAGAAAAAGAUAAAUUAAAACCAUGUAAGUGGUUAAUUAAACGCGUUUUACCCGCACUCAC---------------------- ----.(((..(......)..)))(((...............((((((....))))))........(((.......))).)))..---------------------- ( -15.60, z-score = -1.39, R) >consensus ______U_UUUUUUUUCGAGUGCAGCAGGGAGAUAAAUUAAAACCAUGUAAGUGGUUAAUUAAACGCGUUUUACCCGCACUC__GCCUGCCUCAUAUC________ .................(((.((((....(((.........((((((....))))))........(((.......))).)))....)))))))............. (-12.59 = -14.63 + 2.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:50:58 2011