| Sequence ID | dm3.chr2L |
|---|---|
| Location | 18,906,678 – 18,906,752 |
| Length | 74 |
| Max. P | 0.853450 |
| Location | 18,906,678 – 18,906,752 |
|---|---|
| Length | 74 |
| Sequences | 6 |
| Columns | 80 |
| Reading direction | forward |
| Mean pairwise identity | 69.96 |
| Shannon entropy | 0.55130 |
| G+C content | 0.53963 |
| Mean single sequence MFE | -22.90 |
| Consensus MFE | -13.57 |
| Energy contribution | -14.55 |
| Covariance contribution | 0.98 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.10 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.853450 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 18906678 74 + 23011544 UCUGCGACAGUUGCCGUCCCUGUCACUGGCGGU---CUCCCCUUGAACUUGAGGGGCACACUGGGCGAAAAUAAUGA--- ..(((..((((.((((((.........))))))---..((((((......))))))...)))).)))..........--- ( -21.60, z-score = 0.07, R) >droEre2.scaffold_4845 17218397 67 - 22589142 UCUGCGACAGUUGCCGUCUCUGUCACUGGCGGU---CUCCCCUUGAACUUGAGGGGGGCACUGAGCGAAA---------- ..((((((((.........))))).....((((---((((((((......)))))))).)))).)))...---------- ( -26.20, z-score = -1.35, R) >droYak2.chr2R 5423200 67 + 21139217 UCUGCGACAGUUGCCGUCUCUGUCACUGGCGGC---CUCCCCUUGAACUUGAGGGGCACACUGAGCGAAA---------- ..(((..((((.((((((.........))))))---..((((((......))))))...)))).)))...---------- ( -24.30, z-score = -1.32, R) >droSec1.super_7 2535405 80 + 3727775 UCUGCGACAGUUGCCGUCCCUGUCACUGGCGGCGGUCUCCCCUUGAACUUGAGGGGCACACUGCGCGAAAAAAAUAUAGG ..((((.((((.((((((((.......)).))))))..((((((......))))))...))))))))............. ( -28.90, z-score = -1.75, R) >droSim1.chr2L 18597818 80 + 22036055 UCUGCGACAGUUGCCGUCCCUGUCACUGGCGGCGGUCUCCCCUUGAACUUGAGGGGCACACUGCGCGAAAAUAAAAGAAA ..((((.((((.((((((((.......)).))))))..((((((......))))))...))))))))............. ( -28.90, z-score = -1.93, R) >droVir3.scaffold_12963 9531323 62 + 20206255 ------CCAUUUUCUUUAAUUUUCACAAUUUUU---CUCAACUUGAACUUGGCUAGGCCCGAAAAUGUUGA--------- ------.(((((((.................((---(.......)))...(((...))).)))))))....--------- ( -7.50, z-score = -0.32, R) >consensus UCUGCGACAGUUGCCGUCCCUGUCACUGGCGGC___CUCCCCUUGAACUUGAGGGGCACACUGAGCGAAAA_________ .......((((.((((((.........)))))).....((((((......))))))...))))................. (-13.57 = -14.55 + 0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:50:57 2011