| Sequence ID | dm3.chr2L |
|---|---|
| Location | 18,905,628 – 18,905,721 |
| Length | 93 |
| Max. P | 0.807680 |
| Location | 18,905,628 – 18,905,721 |
|---|---|
| Length | 93 |
| Sequences | 8 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 67.93 |
| Shannon entropy | 0.58629 |
| G+C content | 0.49160 |
| Mean single sequence MFE | -16.07 |
| Consensus MFE | -9.28 |
| Energy contribution | -9.01 |
| Covariance contribution | -0.27 |
| Combinations/Pair | 1.36 |
| Mean z-score | -0.88 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.807680 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2L 18905628 93 + 23011544 --UGCACACAAAAGUGUAAAAUGUUUACGCUUCGCUGGGGCUUCCUCCCGCUCCUCCCGCUUCUUCCAUCCUUCCUGCCUUUAGCUUUCCCGCUG --.(((.....((((((((.....)))))))).((.(((((........)))))....))...............)))...((((......)))) ( -18.30, z-score = -1.54, R) >droSim1.chr2L 18596767 90 + 22036055 --UGCACACAAAAGUGUAAAAUGUUUACGCUUCGCUGGGGCUUCCUCCCGCUCCUCC---AUCUUCCUUUCUUCCUUCCUUUGGCUUUCCCGCUG --.((......((((((((.....)))))))).(..(((((........)))))..)---...............................)).. ( -15.70, z-score = -0.98, R) >droYak2.chr2R 5422137 76 + 21139217 --UGCACACAAAAGUGUAAAAUGUUUACGCUUCGCUGGGGCUUCCUCCCGCUCGUCC---UGCUUCCUUCCUUCCUCACUG-------------- --.(((.((..((((((((.....)))))))).((.((((....)))).))..))..---)))..................-------------- ( -14.70, z-score = -1.43, R) >droEre2.scaffold_4845 17217343 75 - 22589142 --UGCACACAAAAGUGUAAAAUGUUUACGCUUCGCUGGGGCUUCCUCCCGCUCGUCC---UUCUUCCUUCCCUCC-CGCUG-------------- --.((......((((((((.....)))))))).((.((((....)))).))......---...............-.))..-------------- ( -14.40, z-score = -1.38, R) >droAna3.scaffold_12916 1917903 73 + 16180835 --UGCACACAAAAGUGUAAAAUGUUUACGCUUCACUUGGGCUUCCUUUAGCCUCCCCC-CUUUGUCCGGCCGGCCA------------------- --.((..((((((((((((.....)))))))).....(((((......))))).....-..))))...))......------------------- ( -15.40, z-score = 0.08, R) >dp4.chr4_group3 2265399 76 + 11692001 --UGCACACAAAAGUGUAAAAUGUUUACGCUUCGCUUAGGUUUCCUUUUGCCGCUUU---UCCUUUUGGCUCCUUGCACUG-------------- --((((.....((((((((.....)))))))).(((.(((.................---.)))...)))....))))...-------------- ( -13.17, z-score = -0.09, R) >droPer1.super_1 3737475 76 + 10282868 --UGCACACAAAAGUGUAAAAUGUUUACGCUUCGCUUAGGUUUCCUUUUGCUGCUUU---UCCUUUUGGCUCCUUGCACUG-------------- --((((.....((((((((.....)))))))).(((.(((.................---.)))...)))....))))...-------------- ( -13.17, z-score = -0.05, R) >droMoj3.scaffold_6500 30604539 85 - 32352404 UGCACACACAAGAGUGUAAAAUGUUUACGCUUCGCUUGGGUUUCCUUGGGUUCCGUUU-UUGGUUCCAUUUUUGGUUGCCUUUGCU--------- ...........((((((((.....)))))))).((..((((..((...((..(((...-.)))..))......))..))))..)).--------- ( -23.70, z-score = -1.64, R) >consensus __UGCACACAAAAGUGUAAAAUGUUUACGCUUCGCUGGGGCUUCCUCCCGCUCCUCC___UUCUUCCGUCCUUCCUCACUG______________ ...........((((((((.....)))))))).((.((((....)))).))............................................ ( -9.28 = -9.01 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:50:56 2011