| Sequence ID | dm3.chr2L |
|---|---|
| Location | 18,904,332 – 18,904,425 |
| Length | 93 |
| Max. P | 0.506579 |
| Location | 18,904,332 – 18,904,425 |
|---|---|
| Length | 93 |
| Sequences | 7 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 58.01 |
| Shannon entropy | 0.79567 |
| G+C content | 0.55689 |
| Mean single sequence MFE | -30.81 |
| Consensus MFE | -11.99 |
| Energy contribution | -11.93 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.27 |
| Mean z-score | -0.63 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.506579 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 18904332 93 - 23011544 GGCCAGAAGAAAAACGAC-----GCGGCCUAUGCGGCGUAUGCGUAUGUUUCGAGUCCACAUUAUGUAUACGCACGGUGGCACCAUCCUCCUGGGACG------------- ..((((.((........(-----(((.....))))((((((((((((((.........))).)))))))))))..((((....)))))).))))....------------- ( -29.10, z-score = -0.29, R) >droPer1.super_1 3735952 106 - 10282868 ---AGGCAAAGGCAAAGCGGGCGACGGCCUAUGCGGCGUAUGCGUAUGUUCUGAGUCCGCAUUAUGUAUACGCAC-UGAUGCAC-ACCCAUAGAGGGAGGCGGAAAGAAAG ---..(((.((((...(....)....)))).))).((((((((((((((.........))).))))))))))).(-(..(((.(-.(((.....))).))))...)).... ( -34.50, z-score = -0.79, R) >droAna3.scaffold_12916 1916813 108 - 16180835 GGCCCGAAAACCCACACCCCCCAGCGACCUAUGCGGCGUAUGCUUAUGCUCCCUGUCCACAUCGCGUAUACGCACUGUAGCCGCACCACCCGGUGGAGCCCCGGGAGG--- ...........................(((.((((((...(((.(((((.(..((....))..).))))).))).....))))))...(((((.(....)))))))))--- ( -31.40, z-score = 0.64, R) >droSec1.super_7 2533062 93 - 3727775 GGCCAGAAGAAAAACGAC-----UCGGCCUAUGGGGCGUAUGCGUAUGUUUCGAGUCCACAUUAUGUAUACGCACGGUGGCACCAUCCCCCUGGGACG------------- ((((((..(.....)..)-----).))))...(((((((((((((((((.........))).)))))))))))..((((....)))).))).......------------- ( -30.50, z-score = -0.66, R) >droSim1.chr2L 18595485 93 - 22036055 GGCCAGAAGAAAAACGAC-----GCGGCCUAUGGGGCGUAUGCGUAUGUUUCGAGUCCACAUUAUGUAUACGCACGGUGGCACCAUCCCCCUGGGACG------------- ((((.(..(.....)..)-----..))))...(((((((((((((((((.........))).)))))))))))..((((....)))).))).......------------- ( -29.50, z-score = -0.04, R) >droWil1.scaffold_180703 2253151 88 + 3946847 ---GCUCGAAUGAGGGAC---UAGCGACCCACGAGGCGUAUGCGUA----GUGAACGCACAUUAUGUAUACGCACACAGACAUAUGUGUGUGUGUGUA------------- ---.((((.....(((..---......))).))))(((((((((((----(((......))))))))))))))(((((.((((....)))).))))).------------- ( -36.10, z-score = -3.17, R) >droGri2.scaffold_15252 4910305 91 + 17193109 -----GC-AGCACAAAGCAAGUGGCGGCCUACGCGGCGUAUGUGUGCUGGCUAAAGGCACAUUAUGUAUACGCACAUAGAACACAACACAUAGAGAG-------------- -----..-.((.....))..((((((.....))).(((((((..((.((((.....)).)).))..)))))))........))).............-------------- ( -24.60, z-score = -0.14, R) >consensus GGCCAGAAAAAAAACGAC_____GCGGCCUAUGCGGCGUAUGCGUAUGUUCCGAGUCCACAUUAUGUAUACGCACGGUGGCACCAUCCCCCUGGGACG_____________ ...................................(((((((((((................)))))))))))...................................... (-11.99 = -11.93 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:50:55 2011