| Sequence ID | dm3.chr2L |
|---|---|
| Location | 18,901,533 – 18,901,632 |
| Length | 99 |
| Max. P | 0.771236 |
| Location | 18,901,533 – 18,901,632 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 78.72 |
| Shannon entropy | 0.41278 |
| G+C content | 0.41776 |
| Mean single sequence MFE | -21.80 |
| Consensus MFE | -14.23 |
| Energy contribution | -15.03 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.771236 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 18901533 99 - 23011544 GCAGGUUUAUGCGUUUUGAUUAGCAUAAAUCAAAGUUAGUCGGAGGUAGCCAUGACUUAGGCACGUCUCCAUCGGUCGAAAAUCACCGCAUCUAUAUCU ((.(((((((((..........)))))))))..........(((((..(((........)))...)))))...(((.(.....)))))).......... ( -25.50, z-score = -1.91, R) >droEre2.scaffold_4845 17212871 90 + 22589142 GCAGGUUUAUGCGUUUUGAUUAGCAUAAAUCAAAGUAAAUCGAAGGUAGCCAUGACUUAGGCACAUUUCCAACGGCCCAAAAUGACCGCU--------- ((.(((((((((..........))))))))).............(((.(((........))).(((((...........)))))))))).--------- ( -20.30, z-score = -0.95, R) >droYak2.chr2R 5417858 99 - 21139217 GCAGGUUUAUGCGUUUUGAUUAGCAUAAAUCAAAGUUAGUCGGAGGUAGCCAUGACUUAGGCUCGUUUCCAUCGGUCCAAAAUCACCGCAUCUAUAUAU ((.(((((((((..........)))))))))..........(((..(((((........)))).)..)))...(((........))))).......... ( -25.00, z-score = -2.21, R) >droSec1.super_7 2530327 99 - 3727775 GCAGGUUUAUGCGUUUUGAUUAGCAUAAAUCAAAGUUAGUCGGAGGUAGCCAUGACUUAGGCACGUCUCCAUCGGUCCAAGAUCCCCGCAUCUAUAUCU ((.(((((((((..........)))))))))..........(((((..(((........)))...)))))...((((...))))...)).......... ( -23.90, z-score = -1.13, R) >droSim1.chr2L 18591779 99 - 22036055 GCAGUUUUAUGCGUUUUGAUUAGCAUAAAUCAAAGUUAGUCGGAGGUAGCCAUGACUUAGGCACGUCUCCAUCGGUCCGAAAUCCCCGCAUCUAUAUCU ........(((((....(((((((..........)))))))(((((..(((........)))...)))))................)))))........ ( -21.50, z-score = -0.67, R) >droWil1.scaffold_180703 2250436 95 + 3946847 UGAGGUUUAUGCGUUUCGAUUAACAUAAAUAAA---UCACCAGCUACAGCUAUGACAU-GUUUUUUUCAUAAGACAUCAAAAACCCAACCUCUAUUUCG .(((((...((.((((.................---(((..(((....))).))).((-(((((......)))))))...)))).)))))))....... ( -14.60, z-score = -1.82, R) >consensus GCAGGUUUAUGCGUUUUGAUUAGCAUAAAUCAAAGUUAGUCGGAGGUAGCCAUGACUUAGGCACGUCUCCAUCGGUCCAAAAUCACCGCAUCUAUAUCU ((.(((((((((..........)))))))))..........(((((..(((........)))...))))).................)).......... (-14.23 = -15.03 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:50:51 2011