| Sequence ID | dm3.chr2L |
|---|---|
| Location | 18,894,109 – 18,894,165 |
| Length | 56 |
| Max. P | 0.887516 |
| Location | 18,894,109 – 18,894,165 |
|---|---|
| Length | 56 |
| Sequences | 7 |
| Columns | 67 |
| Reading direction | forward |
| Mean pairwise identity | 86.88 |
| Shannon entropy | 0.24469 |
| G+C content | 0.48006 |
| Mean single sequence MFE | -8.01 |
| Consensus MFE | -7.77 |
| Energy contribution | -7.57 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.887516 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 18894109 56 + 23011544 CCGAGUAUCAUCUGCUUAAUCACCAAAAAUAGCCACCAUAUGGCACUCGCCCACAG----------- .(((((......((......)).........((((.....))))))))).......----------- ( -8.20, z-score = -1.84, R) >droSim1.chr2L 18584562 56 + 22036055 CCGAGUAUCAUCUGCUUAAUCACCAAAAAUAGCCACCAUAUGGCACUCGCCCACAG----------- .(((((......((......)).........((((.....))))))))).......----------- ( -8.20, z-score = -1.84, R) >droSec1.super_7 2523018 56 + 3727775 CCGAGUAUCAUCUGCUUAAUCACCAAAAAUAGCCACCAUAUGGCACUCGCCCACAG----------- .(((((......((......)).........((((.....))))))))).......----------- ( -8.20, z-score = -1.84, R) >droYak2.chr2R 5410087 56 + 21139217 CCGAGUAUCAUCUGCUUAAUCACCAAAAAUAGCCACCAUAUGGCACUCGCCCACAG----------- .(((((......((......)).........((((.....))))))))).......----------- ( -8.20, z-score = -1.84, R) >droEre2.scaffold_4845 17205634 56 - 22589142 CCGAGUAUCAUCUGCUUAAUCACCAAAAAUAGCCACCAUAUGGCACUCGCCCACAG----------- .(((((......((......)).........((((.....))))))))).......----------- ( -8.20, z-score = -1.84, R) >droAna3.scaffold_12916 1908144 50 + 16180835 CCGGGUAUCAUCUGCUUAAUCACCAAAAAUAGCCACCAUAUGGCACU-GCC---------------- ..(((((.....)))))..............((((.....))))...-...---------------- ( -6.50, z-score = 0.67, R) >droWil1.scaffold_180703 2241482 66 - 3946847 GCGUGUAUCAUCUGCUUAAUCACCAAAA-UAGCCACCAUAUGGCACACGAAUGCCACGAGUCCAACU .(((((......((......))......-..((((.....))))))))).................. ( -8.60, z-score = 0.32, R) >consensus CCGAGUAUCAUCUGCUUAAUCACCAAAAAUAGCCACCAUAUGGCACUCGCCCACAG___________ .(((((......((......)).........((((.....))))))))).................. ( -7.77 = -7.57 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:50:50 2011