| Sequence ID | dm3.chr2L |
|---|---|
| Location | 18,892,890 – 18,892,995 |
| Length | 105 |
| Max. P | 0.716331 |
| Location | 18,892,890 – 18,892,995 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 90.55 |
| Shannon entropy | 0.15674 |
| G+C content | 0.52911 |
| Mean single sequence MFE | -30.78 |
| Consensus MFE | -22.16 |
| Energy contribution | -22.12 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.716331 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 18892890 105 + 23011544 CCCACUCCACUUGCAAACCCAUUCCAAUCG----------CGGUGCCCCUGCUCCGAUUCGGAACUCCCGAUACUCGAGCAGCACAGUUGCCGUUUUUGUGGUUUUUGUAUAUGU .......((..((((((.(((...(((..(----------((((..(.((((((.((.((((.....))))...))))))))....)..)))))..))))))..))))))..)). ( -29.70, z-score = -2.75, R) >droEre2.scaffold_4845 17204424 115 - 22589142 CCCACUCCAGCUGCAAACCCAUUCCAUUCGGUACCAUUCGCGGUGCCCCUGCUCCGAUUCGGAAUUCUCGAUGCUCGAGCAGCACAGUUGCCGUUUUUGUGGUUUUUGUAUAUGU .((((...(((.((((.............((((((......)))))).((((((.((.((((.....))))...)))))))).....)))).)))...))))............. ( -32.60, z-score = -1.77, R) >droYak2.chr2R 5408914 105 + 21139217 CCCACUCCAGUUGCAAGCCCAUUCCAUUCG----------CGGUGCCCCUGCUCCGAUUCGGAAUUCUGGAUUCGAGAGCAGCACAGUUGCCGUUUUUGUGGUUUUUGUAUAUGU .......((..((((((.((((.......(----------((((..(.((((((((((((((....))))).))).))))))....)..)))))....))))..))))))..)). ( -30.40, z-score = -1.63, R) >droSec1.super_7 2521803 105 + 3727775 CCCACUCCACUUGCGAACCCAUUCCAAUCG----------CGGUGCCCCUGCUCCGACUCGGAACUCCCGAUUCUCGAGCAGCACAGUUGCCGUUUUUGUGGUUUUUGUAUAUGU .......((..((((((.(((...(((..(----------((((..(.((((((.((.((((.....)))).))..))))))....)..)))))..))))))..))))))..)). ( -30.60, z-score = -2.64, R) >droSim1.chr2L 18583343 105 + 22036055 CCCACUCCACUUGCGAACCCAUUCCAAUCG----------CGGUGCCCCUGCUCCGACUCGGAACUCCCGAUUCUCGAGCAGCACAGUUGCCGUUUUUGUGGUUUUUGUAUAUGU .......((..((((((.(((...(((..(----------((((..(.((((((.((.((((.....)))).))..))))))....)..)))))..))))))..))))))..)). ( -30.60, z-score = -2.64, R) >consensus CCCACUCCACUUGCAAACCCAUUCCAAUCG__________CGGUGCCCCUGCUCCGAUUCGGAACUCCCGAUUCUCGAGCAGCACAGUUGCCGUUUUUGUGGUUUUUGUAUAUGU .......((..((((((.((((..................((((..(.((((((.((.((((.....)))).))..))))))....)..)))).....))))..))))))..)). (-22.16 = -22.12 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:50:50 2011