| Sequence ID | dm3.chr2L |
|---|---|
| Location | 18,846,353 – 18,846,433 |
| Length | 80 |
| Max. P | 0.934779 |
| Location | 18,846,353 – 18,846,433 |
|---|---|
| Length | 80 |
| Sequences | 6 |
| Columns | 82 |
| Reading direction | reverse |
| Mean pairwise identity | 70.45 |
| Shannon entropy | 0.55953 |
| G+C content | 0.33650 |
| Mean single sequence MFE | -18.14 |
| Consensus MFE | -7.64 |
| Energy contribution | -6.67 |
| Covariance contribution | -0.97 |
| Combinations/Pair | 1.80 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.39 |
| SVM RNA-class probability | 0.934779 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 18846353 80 - 23011544 AAGAAUUACUAUUUCCUUUUGCAUUUAGCAGUGAACUU--GGUUCAAUUGAACCAAUUCAGAUGGUGAACCAUGCACCAACA .....((((((((.....((((.....))))((((.((--(((((....))))))))))))))))))).............. ( -19.40, z-score = -2.39, R) >droSec1.super_7 2472720 79 - 3727775 AAGAAUUACUAAUUCUUGUUGUAUUUAGCAGUGAACUU--GGUUCAAUUGAACCAAUUCAGAUGGUGAACC-UGCACCAGCA ((((((.....))))))..........((..((((.((--(((((....)))))))))))..(((((....-..))))))). ( -22.30, z-score = -2.80, R) >droYak2.chr2R 5360977 80 - 21139217 AUGAAAUGGAAUCCCUUUUUCUAUUUAGCAGUGAACUU--GGUUCAAUUGAACCAAUUCAGAUGGUGAACCUUGCACCAACA ...((((((((.......)))))))).((((((((.((--(((((....)))))))))))...((....))))))....... ( -22.20, z-score = -2.82, R) >droEre2.scaffold_4845 17159168 80 + 22589142 AAGAAAUAGAAUUUCUUUUUGUAUUUAGCAGUGAACUU--GGUUCAAUUGAACCAAUUCAGAUGGUGAACCUUGCACCAACA (((((((...))))))).((((.....))))((((.((--(((((....)))))))))))(.(((((.......))))).). ( -19.20, z-score = -2.12, R) >dp4.chr4_group3 2202846 78 - 11692001 AAGAUUUAAUGUUUUCUUU--CAUUUGGCGGUGAAUUU--GGUUCAAUUGAACCAAUUCCGAAAAUGAAUCUUGCACAAACA .........(((.....((--(((((..(((.....((--(((((....)))))))..))).)))))))....)))...... ( -19.80, z-score = -2.43, R) >droWil1.scaffold_180703 2177344 78 + 3946847 --AACUUUUUAACUUUUUU--CACUUACUUUUUUACUUUAAAACCAAACUGUGAAACUAAAAAAUUGAAGUAGGCUCAACCU --.................--..(((((((((((((..............)))))...........))))))))........ ( -5.94, z-score = 0.33, R) >consensus AAGAAUUACUAUUUCUUUUUGCAUUUAGCAGUGAACUU__GGUUCAAUUGAACCAAUUCAGAUGGUGAACCUUGCACCAACA ...........................(((..........(((((....))))).........((....)).)))....... ( -7.64 = -6.67 + -0.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:50:41 2011