| Sequence ID | dm3.chr2L |
|---|---|
| Location | 18,838,947 – 18,839,039 |
| Length | 92 |
| Max. P | 0.740644 |
| Location | 18,838,947 – 18,839,039 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 69.60 |
| Shannon entropy | 0.48044 |
| G+C content | 0.58431 |
| Mean single sequence MFE | -35.57 |
| Consensus MFE | -21.16 |
| Energy contribution | -22.85 |
| Covariance contribution | 1.69 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.740644 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 18838947 92 + 23011544 GUUGUUGCGGCUGUGGGUGCCCCUGCAGUUGU---UGCCACCGACGAUGCUACUGCCUGUUCCUCUUCAGCUGCAGCUAGCAUUAUACGUGCAUU---- ((.((.(((((((..((....))..)))))))---.)).))(((..(((((((((((((........)))..)))).))))))..).))......---- ( -32.40, z-score = -1.21, R) >droSim1.chr2L 18528256 95 + 22036055 GCUGUUGCGGCUGUGGGUGCCCCUGCAGUUGUUGUUGCCACCGACGAUGCUACUGCCUGUCCCUCUUCAGCUGCAGCUAGCAUUGUACGUGCAUU---- ((....(((((((..((....))..)))))))....))(((..((((((((((((((((........)))..)))).)))))))))..)))....---- ( -37.80, z-score = -2.09, R) >droSec1.super_7 2465406 95 + 3727775 GUUGUUGCGGCUGUGGGUGCCCCUGCAGUUGUUGUUGCCACCGACGAUGCUACUGCCUGUCCCUCUUCAGCUGCAGCUAGCAUUGUACGUGCAUC---- ...((((((((((.(((.((....(((((.(((((((....)))))))...)))))..)))))....))))))))))..((((.....))))...---- ( -36.60, z-score = -2.04, R) >anoGam1.chr3L 34978703 96 + 41284009 GGCGGUGUGGGUGUUGGUGGCCGCGGAGAUGA---UGCUACCGGUGGCGCUACGAACGGUGUUGUCACGAUCGGCUGUUCCGGCACCGGAAUAUUCUCC ..((((((.((....((..(((((((((....---..)).)))((((((.(((.....))).))))))...))))..)))).))))))........... ( -35.50, z-score = 0.25, R) >consensus GUUGUUGCGGCUGUGGGUGCCCCUGCAGUUGU___UGCCACCGACGAUGCUACUGCCUGUCCCUCUUCAGCUGCAGCUAGCAUUAUACGUGCAUU____ ......(((((((((((....)))))))))))...((.(((..((((((((((((((((........)))..)))).)))))))))..)))))...... (-21.16 = -22.85 + 1.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:50:40 2011