| Sequence ID | dm3.chr2L |
|---|---|
| Location | 18,817,989 – 18,818,081 |
| Length | 92 |
| Max. P | 0.714092 |
| Location | 18,817,989 – 18,818,081 |
|---|---|
| Length | 92 |
| Sequences | 12 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 70.62 |
| Shannon entropy | 0.59244 |
| G+C content | 0.34911 |
| Mean single sequence MFE | -16.86 |
| Consensus MFE | -6.82 |
| Energy contribution | -6.80 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.714092 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 18817989 92 + 23011544 -----------------AAUUCUAACUUU-UCACUUGUGAAACGC--UCACAAUUAAGUCACACUUUUAAUGACGUGACGCAAAUAUUAAAACCCAGCACUUCCUGGGAAAA -----------------............-((((((((((.....--))))))....((((.........))))))))..............(((((......))))).... ( -18.60, z-score = -2.94, R) >droWil1.scaffold_180708 1542233 76 - 12563649 -----------------AAUUUUCACUUUGCCACUUGUGAAAUUU--UAACAAUUAAGUCACAAUUU-AAUGACGUGCAGCAAAUAUUAAAACAAA---------------- -----------------.........((((((((((((.......--..))))....((((......-..)))))))..)))))............---------------- ( -9.40, z-score = -0.31, R) >droGri2.scaffold_15252 11271325 105 - 17193109 AAUUUUGCUGCAUUUGGCAUUU-CACUUU-UGGCUUCUGAAAAUU-UUCACAAUUAAAGGACC--UUUAAUGACGUGUCGCAAAUAU--UAACACAACACUUCCUGCCAGGC ............(((((((...-..((((-(((.((.((((....-)))).)))))))))...--.........((((.........--..)))).........))))))). ( -14.50, z-score = 0.93, R) >droMoj3.scaffold_6500 5798081 105 - 32352404 AAUUUUCCUGCACUUGCCAUUU-CACUUU-UCGCUCGUGAAAAUU-UUCACAAUUAAGGCGCA--UUUAAUGACGUGUUGCUAAUAU--AAACACAACACUUCCUGGCAGGC ............(((((((...-......-.((((.(((((....-)))))......))))..--......((.((((((.......--.....)))))).)).))))))). ( -21.40, z-score = -1.53, R) >droVir3.scaffold_12963 2382380 106 - 20206255 AAUUUUCCUGCAUUUGGCAUUUUCACUUU-UCGCUUGUGAAAAUU-UUCACAAUUAAGGCGCA--UUUAAUGACGUGUCGCAAAUAU--AAACACAACACUUCCUGCCAGAC ............(((((((......(((.-....(((((((....-)))))))..)))(((((--(........))).)))......--...............))))))). ( -19.50, z-score = -1.14, R) >droSim1.chr2L 18505714 92 + 22036055 -----------------AAUUCCAACUUU-UCACUUGUGAAACGC--UCACAAUUAAGUCACACUUUUAAUGACGUGACGCAAAUAUUAAAACCCAACACUUCCUGGGAAAA -----------------............-((((((((((.....--))))))....((((.........))))))))..............((((........)))).... ( -16.10, z-score = -2.24, R) >droSec1.super_7 2438237 92 + 3727775 -----------------AAUUCCAACUUU-UCACUUGUGAAACGC--UCACAAUUAAGUCACACUUUUAAUGACGUGACGCAAAUAUUAAAACCCAGCACUUCCUGGGAAAA -----------------............-((((((((((.....--))))))....((((.........))))))))..............(((((......))))).... ( -18.60, z-score = -2.76, R) >droYak2.chr2R 5331082 92 + 21139217 -----------------AAUUCUAACUUU-UCACUUGUGAAACGC--UCACAAUUAAGUCACACUUUUAAUGACGUGACGCAAAUAUUAAAACACAAGACUUCCUGGGAAAA -----------------..((((......-...((((((....((--((((.((((((.......))))))...)))).))...(....)..))))))........)))).. ( -12.83, z-score = -0.76, R) >droEre2.scaffold_4845 17130118 92 - 22589142 -----------------AAUUCAAACUUU-UCACUUGUGAAACGC--UCACAAUUAAGUCACACUUUUAAUGACGUGACGCAAAUAUUAAAACAGAGGACUUCCUGGGAAAA -----------------.........(((-((..((((((.....--))))))....(((((............)))))................(((....))).))))). ( -14.60, z-score = -0.65, R) >droAna3.scaffold_12916 8285061 87 + 16180835 ------------------------AAUUU-UCACUUGUGAAAAGUAUUCAUAAUUAAGUCACAGUUUUAAUGACGUGACGGAAAUAUUAAAAGUGAACACUUCCCGGAGAAA ------------------------....(-(((((((((((.....)))))......(((((.(((.....))))))))...........)))))))..(((....)))... ( -17.80, z-score = -1.60, R) >dp4.chr4_group3 4809015 98 + 11692001 ----------AAUUUUCACUUUUCACUUU-UCACUUGUGAAUUGU--UCACAAUUAAGUCACACUUUUAAUGACGUGACGCAAAUAUUAAAACACACGCUCCUUCGGAGCG- ----------...................-.....(((((((((.--...)))))..(((((............))))).............))))((((((...))))))- ( -19.50, z-score = -2.94, R) >droPer1.super_1 6301893 98 + 10282868 ----------AAUUUUCACUUUUCACUUU-UCACUUGUGAAUUGU--UCACAAUUAAGUCACACUUUUAAUGACGUGACGCAAAUAUUAAAACACACGCUCCUUGGGAGCG- ----------...................-.....(((((((((.--...)))))..(((((............))))).............))))((((((...))))))- ( -19.50, z-score = -2.50, R) >consensus _________________AAUUUUCACUUU_UCACUUGUGAAACGU__UCACAAUUAAGUCACACUUUUAAUGACGUGACGCAAAUAUUAAAACACAACACUUCCUGGGAAAA ..................................((((((.......))))))....(((((............)))))................................. ( -6.82 = -6.80 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:50:39 2011