| Sequence ID | dm3.chr2L |
|---|---|
| Location | 18,805,670 – 18,805,731 |
| Length | 61 |
| Max. P | 0.990469 |
| Location | 18,805,670 – 18,805,731 |
|---|---|
| Length | 61 |
| Sequences | 8 |
| Columns | 61 |
| Reading direction | reverse |
| Mean pairwise identity | 79.58 |
| Shannon entropy | 0.41183 |
| G+C content | 0.45642 |
| Mean single sequence MFE | -10.91 |
| Consensus MFE | -6.08 |
| Energy contribution | -6.19 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.76 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.42 |
| SVM RNA-class probability | 0.990469 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 18805670 61 - 23011544 UUCCUACCUCUCGUCAAAUCCGCGCUUUUCAUGCGCAAAUUGUGCAUUUAAGUCCACAAUG .....................((((.......))))..((((((.((....)).)))))). ( -11.50, z-score = -3.22, R) >droAna3.scaffold_12916 8272415 57 - 16180835 ----UUCCAUAUUAUAAAACACCGUUUUUCAUGCGCAAAUUGUGCAUUUAUGUCGACAAUG ----..................((......((((((.....))))))......))...... ( -7.80, z-score = -0.59, R) >droEre2.scaffold_4845 17117865 60 + 22589142 -UGCCCCCUCCCUUCAAAUCCGCGCUUUUUGUGCGCAAAUUGUGCAUUUAAGUCCACAAUG -....................((((.......))))..((((((.((....)).)))))). ( -11.50, z-score = -2.60, R) >droYak2.chr2R 5318678 59 - 21139217 --UCCCCCUCCCUUAAAAUCCGCGCUUUUUGUGCGCAAAUUGUGCAUUUAAGUCCACAAUG --...................((((.......))))..((((((.((....)).)))))). ( -11.50, z-score = -3.71, R) >droSec1.super_7 2425762 61 - 3727775 UCCCUCCCUCUCUUCAAAUCCGCGCUUUUCAUGCGCAAAUUGUGCAUUUAAGUCCACAAUG .....................((((.......))))..((((((.((....)).)))))). ( -11.50, z-score = -4.29, R) >droSim1.chr2L 18492652 61 - 22036055 UCCCUCCCUCUCUUCAAAUCCGCGCUUUUCAUGCGCAAAUUGUGCAUUUAAGUCCACAAUG .....................((((.......))))..((((((.((....)).)))))). ( -11.50, z-score = -4.29, R) >droPer1.super_1 6288611 61 - 10282868 UGCCCACCUCCCUCUCCUUGCGUGCUUUUCAGCCGCAAAUUGUGCAUUUAUGUCGACAAUG .................(((((.(((....))))))))((((((((....)))..))))). ( -11.00, z-score = -1.68, R) >dp4.chr4_group3 4796905 61 - 11692001 UGCCCACCUCCCUCUCCUUGCGUGCUUUUCAGCCGCAAAUUGUGCAUUUAUGUCGACAAUG .................(((((.(((....))))))))((((((((....)))..))))). ( -11.00, z-score = -1.68, R) >consensus U_CCCCCCUCCCUUCAAAUCCGCGCUUUUCAUGCGCAAAUUGUGCAUUUAAGUCCACAAUG .....................((((.......))))..(((((((......))..))))). ( -6.08 = -6.19 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:50:38 2011