| Sequence ID | dm3.chr2L |
|---|---|
| Location | 18,789,369 – 18,789,429 |
| Length | 60 |
| Max. P | 0.542783 |
| Location | 18,789,369 – 18,789,429 |
|---|---|
| Length | 60 |
| Sequences | 5 |
| Columns | 60 |
| Reading direction | forward |
| Mean pairwise identity | 85.74 |
| Shannon entropy | 0.23318 |
| G+C content | 0.36242 |
| Mean single sequence MFE | -11.03 |
| Consensus MFE | -8.18 |
| Energy contribution | -7.90 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.542783 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 18789369 60 + 23011544 AUACGAACAUACAUAGAUUCUCUCUUUUUUUUUUUUUAGUGGAGCGAUUUCCAUGUGUGC .......(((((((.((.((.((((...............)))).))..)).))))))). ( -12.26, z-score = -2.42, R) >droEre2.scaffold_4845 17102046 54 - 22589142 ACACGAACAUACAAAGGUUCUUUUUUUUUUU------AGUGGAGCGAUUUCCAUGUGUGC ((((((((........))))...........------.((((((....)))))))))).. ( -11.50, z-score = -1.69, R) >droYak2.chr2R 5303193 51 + 21139217 AUACGAACAUACAUAGGUUCUCUUUCUU---------AGUGGAGCGAUUUUCAUGUGUUC ....(((((((...(((((((((.....---------...)))).)))))...))))))) ( -10.90, z-score = -1.73, R) >droSec1.super_7 2409846 53 + 3727775 AUACGAACAAACAUAGAUUCUUUCUUUUUU-------AGUGGAGCGAUUUCCAUGUGUGC .......((.((((.((.((.((((.....-------...)))).))..)).)))).)). ( -6.90, z-score = 0.11, R) >droSim1.chr2L 18474859 53 + 22036055 AUACGAACAUACAUAGAUUCUCUCUUUUUU-------AGUGGAGCGAUUUCCAUGUGUGC .......(((((((.((.((.((((.....-------...)))).))..)).))))))). ( -13.60, z-score = -2.66, R) >consensus AUACGAACAUACAUAGAUUCUCUCUUUUUU_______AGUGGAGCGAUUUCCAUGUGUGC .......(((((((.((.((.((((...............)))).))..)).))))))). ( -8.18 = -7.90 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:50:36 2011