| Sequence ID | dm3.chr2L |
|---|---|
| Location | 18,772,361 – 18,772,461 |
| Length | 100 |
| Max. P | 0.730700 |
| Location | 18,772,361 – 18,772,461 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 75.77 |
| Shannon entropy | 0.43442 |
| G+C content | 0.44403 |
| Mean single sequence MFE | -18.59 |
| Consensus MFE | -10.69 |
| Energy contribution | -12.53 |
| Covariance contribution | 1.83 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.730700 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 18772361 100 - 23011544 ------------ACACCCCCUAGAGCACCACAGCUUUCUC-CUCAACCUCUCUGCUCAUAUUCAACACUCAUUUCCCCUAGGAA-UUGUUUAAAGAUGCAGAGAGAGAAAAAAU ------------.........(((((......)))))...-......((((((((......((......((.((((....))))-.))......)).))))))))......... ( -20.60, z-score = -2.59, R) >droSim1.chr2L 18457926 100 - 22036055 ------------ACACCCCCUAGAGCACCUCAGCUUUCUC-CUCAACCUCUCUGCUCAUAUUCAACACUCAUUUCCCCUAGGAA-UUGUUUAAAGAUGCAGAGAGAGAAAAAAU ------------.........(((((......)))))...-......((((((((......((......((.((((....))))-.))......)).))))))))......... ( -20.60, z-score = -2.28, R) >droSec1.super_7 2393007 100 - 3727775 ------------ACACCCCCUAGAGCACCUCAGCUUUCUC-CUCAACCUCUCUGCUCAUAUUCAACACUCAUUUCCCAUAGGAA-UUGUUUAAAGAUGCAGAGAGAGAAAAAUU ------------.........(((((......)))))...-......((((((((......((......((.((((....))))-.))......)).))))))))......... ( -20.60, z-score = -2.33, R) >droYak2.chr2R 5286129 112 - 21139217 CCUCUCCCUCAGCCACCCCCUAGAGCACCUCAGCUUUCUC-CUCAACCUCUGUGCUCAUAUUCAACACUCGUUUCCCCUAGGAA-UUGUUUAAAGAUGCAGAGAGAGAAAUAUA ..((((.(((.((.........((((((............-..........))))))............((.((((....))))-.)).........)).))).))))...... ( -19.95, z-score = -0.82, R) >droEre2.scaffold_4845 17085061 111 + 22589142 CCUCGCCCUCAGCCACCCCCUAGAGCACCUCGGCCUGCUC-CUCAACCUCUCUGCUCAUAUUCAACACUCAUUUCCCCUAGGAA-UUGCUUAAAGAUGCAGAGAGAGAAAU-UA .......(((............(((((........)))))-.......(((((((......((......((.((((....))))-.))......)).))))))))))....-.. ( -22.30, z-score = -0.87, R) >droAna3.scaffold_12916 8241630 78 - 16180835 ------------------------------------ACUCACUCAACCUCUGAACUAGCAUUCAACACUCAUUUCCCCUACGAACUUUUUUUCGGAAGCGAACUGAAAGAAAAU ------------------------------------..............((((......))))....................(((((.((((....))))..)))))..... ( -7.50, z-score = -0.27, R) >consensus ____________ACACCCCCUAGAGCACCUCAGCUUUCUC_CUCAACCUCUCUGCUCAUAUUCAACACUCAUUUCCCCUAGGAA_UUGUUUAAAGAUGCAGAGAGAGAAAAAAU ......................((((......))))...........((((((((........((((.....((((....))))..)))).......))))))))......... (-10.69 = -12.53 + 1.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:50:34 2011