| Sequence ID | dm3.chr2L |
|---|---|
| Location | 18,752,693 – 18,752,805 |
| Length | 112 |
| Max. P | 0.578949 |
| Location | 18,752,693 – 18,752,805 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 59.83 |
| Shannon entropy | 0.74123 |
| G+C content | 0.41103 |
| Mean single sequence MFE | -21.91 |
| Consensus MFE | -7.42 |
| Energy contribution | -6.45 |
| Covariance contribution | -0.97 |
| Combinations/Pair | 1.78 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.578949 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 18752693 112 - 23011544 -----UUUUGGAACAUACAUAUAUGUUUCCUAACAUCUCG-CCCUUAUUUCGAGAAUAGCUCAUCUCAAAGUUUCGUUACCCACAAGAGUAUUAGAAGCCAAGAUCGCCUUGGUCCAA -----....((((((((....))))))))((((...(((.-..........((((........))))........((.....))..)))..))))..((((((.....)))))).... ( -19.90, z-score = -1.25, R) >droSim1.chr2L 18440334 108 - 22036055 -----UUUUGAA----ACAUAUAUGUUUCCUAACAACUUGUCCCUUCUUUCGAGAAUAGCUCAUCUCAAAGUUUCGUUACCCACAAGGGUAUGAGAAGCCAAGAUCGCCUUGGUCCA- -----....(((----(((....)))))).................((((.((((........))))))))((((((.((((....)))))))))).((((((.....))))))...- ( -25.00, z-score = -2.03, R) >droSec1.super_7 2373849 108 - 3727775 -----UUUUGAA----ACAUAUAUGUUUCCAAACAACUUGUCCCUUAUUUCGAGAAUAGCUCAUCUCAAAGUUUCGUUACCCACUAGGGUAUUAGAAGCCUAGAUCGCCUUGGUCCA- -----....(((----(((....)))))).........((..((.....((((((........))))...(((((..(((((....)))))...)))))...)).......))..))- ( -22.60, z-score = -1.83, R) >droYak2.chr2R 5266240 114 - 21139217 UUUGGUCUUACACAUUUGCAGAAUACCUCAAUCUCUCUAGAAUUCUGU---GUGAAAAGCGCGUCUAAUAGUUUCUUCACCCAUUAGAGUAUGAGAAGCCAAGAUCGCCUUGGUCCA- ..((((((((.((....(((((((.................)))))))---(((((((((..........)))).)))))........)).))))).((((((.....)))))))))- ( -23.13, z-score = -0.25, R) >droEre2.scaffold_4845 17065474 100 + 22589142 --------------UUUUAUGAAUACCUUAACCCCACUAGAACUCCGU---GUGGAAAGCUCAUCCACAAGUUUCCUUACCCACUGGAGUAUUAGGAGCCAAGAUCGCCUUGGUCCA- --------------......................((((.(((((.(---(((((.......)))))).((......)).....))))).))))(..(((((.....)))))..).- ( -24.80, z-score = -1.87, R) >droAna3.scaffold_12916 8222832 84 - 16180835 ------------------------------GAUCUUACAGAGAAACAUU--AUAAGAAUUAUUUCCUGAAAGUGCCUCGGCUA-UAGUGUAUUGGAAGCUGAGAUCCUCUUGGCCCA- ------------------------------..((((...)))).(((((--(((.(((....)))........((....))))-))))))..(((..((..((.....))..)))))- ( -16.00, z-score = 0.25, R) >consensus _____UUUUG_A____ACAUAUAUGUUUCCAAACAACUAGACCCUUAUU__GAGAAAAGCUCAUCUCAAAGUUUCGUUACCCACUAGAGUAUUAGAAGCCAAGAUCGCCUUGGUCCA_ ...................................................(((.....)))...................................((((((.....)))))).... ( -7.42 = -6.45 + -0.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:50:33 2011